Reorganised starting of software to be a function

This will allow generation of App and Standalone installers

src/SpectralAnalysis.m → SpectralAnalysis.m

@@ -1,5 +1,6 @@
 %% SpectralAnalysis
 % Spectral Imaging analysis software
+function spectralAnalysis = SpectralAnalysis()
 
 % Get location of current m-file
 if(isdeployed())
@@ -23,27 +24,11 @@
 if ~exist(spectralAnalysisHome, 'file')
     mkdir(spectralAnalysisHome);
 
-    copyfile([path filesep '..' filesep 'files' filesep 'profiles'], [spectralAnalysisHome filesep 'profiles'])
+    copyfile([path filesep 'files' filesep 'profiles'], [spectralAnalysisHome filesep 'profiles'])
 end
 
 % TODO: Check version on github to see if update available
 
 % Launch spectral analysis interface
-try 
-    spectralAnalysis = SpectralAnalysisInterface();
-catch err
-    if((strcmp(err.identifier, 'MATLAB:class:undefinedMethod') || strcmp(err.identifier, 'MATLAB:class:InvalidSuperClass')) ...
-            && ~isempty(strfind(err.message, 'Figure')))
-        disp('ERROR: Missing MOOGL. Download from https://github.com/AlanRace/MOOGL and place in src/gui/MOOGL folder');
-
-        return;
-    else
-        throw(err);
-    end
-end
-
+spectralAnalysis = SpectralAnalysisInterface();
 
-% Check that a valid licence exists, otherwise show the 
-if(~isValidLicence())
-    MissingLicenceFigure();
-end

docs-src/content/installation/_index.md

@@ -20,12 +20,10 @@ The source code version requires a valid MATLAB licence.
 
 #### Installation with Git
 
-1. Clone the repository and initialise the submodules
+1. Clone the repository
 
 ```bash
 git clone https://github.com/AlanRace/SpectralAnalysis
-cd SpectralAnalysis
-git submodule update --init
 ```
 
 2. Open MATLAB and navigate to the folder containing the source code 

runSpectralAnalysis.m

@@ -2,6 +2,7 @@
 path = [fileparts(mfilename('fullpath')) filesep 'src'];
 
 % Ensure all folders are on the path
+addpath(fileparts(mfilename('fullpath')));
 addpath(genpath(path));
 
 SpectralAnalysis