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AlanRace committed Jul 24, 2020
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<!doctype html><html lang=en class="js csstransforms3d"><head><meta charset=utf-8><meta name=viewport content="width=device-width,initial-scale=1"><meta name=generator content="Hugo 0.74.3"><meta name=description content="SpectralAnalysis: software for the masses documentation"><meta name=author content="Alan Race"><link rel=icon href=./images/favicon.png type=image/png><title>SpectralAnalysis :: SpectralAnalysis: Software for the masses</title><link href=./css/nucleus.css rel=stylesheet><link href=./css/fontawesome-all.min.css rel=stylesheet><link href=./css/hybrid.css rel=stylesheet><link href=./css/featherlight.min.css rel=stylesheet><link href=./css/perfect-scrollbar.min.css rel=stylesheet><link href=./css/auto-complete.css rel=stylesheet><link href=./css/atom-one-dark-reasonable.css rel=stylesheet><link href=./css/theme.css rel=stylesheet><link href=./css/hugo-theme.css rel=stylesheet><link href=./css/theme-blue.css rel=stylesheet><script src=./js/jquery-3.3.1.min.js></script><style>:root #header+#content>#left>#rlblock_left{display:none!important}</style><link rel=stylesheet type=text/css href=css/definition.css></head><body data-url=./><nav id=sidebar><div id=header-wrapper><div id=header><a href=./><img src=./images/SpectralAnalysis-logo.png></a></div><div class=searchbox><label for=search-by><i class="fas fa-search"></i></label><input data-search-input id=search-by type=search placeholder=Search...>
<span data-search-clear><i class="fas fa-times"></i></span></div><script type=text/javascript src=./js/lunr.min.js></script><script type=text/javascript src=./js/auto-complete.js></script><script type=text/javascript>var baseurl="";</script><script type=text/javascript src=./js/search.js></script></div><div class=highlightable><ul class=topics><li data-nav-id=/installation/ title=Installation class=dd-item><a href=./installation/>Installation</a></li><li data-nav-id=/basic-usage/ title="General Use" class=dd-item><a href=./basic-usage/>General Use</a><ul><li data-nav-id=/basic-usage/load-data/ title="Load data" class=dd-item><a href=./basic-usage/load-data/>Load data</a><ul><li data-nav-id=/basic-usage/load-data/parser/ title=Parser class=dd-item><a href=./basic-usage/load-data/parser/>Parser</a></li><li data-nav-id=/basic-usage/load-data/continuous-vs-profile/ title="Continuous vs Profile" class=dd-item><a href=./basic-usage/load-data/continuous-vs-profile/>Continuous vs Profile</a></li><li data-nav-id=/basic-usage/load-data/data-representation/ title="Data Representation" class=dd-item><a href=./basic-usage/load-data/data-representation/>Data Representation</a></li></ul></li><li data-nav-id=/basic-usage/visualisation/ title="Data visualisation" class=dd-item><a href=./basic-usage/visualisation/>Data visualisation</a></li><li data-nav-id=/basic-usage/region-of-interest/ title="Region of Interest" class=dd-item><a href=./basic-usage/region-of-interest/>Region of Interest</a></li><li data-nav-id=/basic-usage/ensure-consistent-mz-axis/ title="Ensure consistent m/z axis" class=dd-item><a href=./basic-usage/ensure-consistent-mz-axis/>Ensure consistent m/z axis</a></li><li data-nav-id=/basic-usage/preprocessing/ title="Spectral Preprocessing" class=dd-item><a href=./basic-usage/preprocessing/>Spectral Preprocessing</a><ul><li data-nav-id=/basic-usage/preprocessing/normalisation/ title=Normalisation class=dd-item><a href=./basic-usage/preprocessing/normalisation/>Normalisation</a></li></ul></li><li data-nav-id=/basic-usage/spectral-representation/ title="Spectral Representation" class=dd-item><a href=./basic-usage/spectral-representation/>Spectral Representation</a></li><li data-nav-id=/basic-usage/data-reduction/ title="Data Reduction" class=dd-item><a href=./basic-usage/data-reduction/>Data Reduction</a></li><li data-nav-id=/basic-usage/multivariate/ title="Multivariate analysis" class=dd-item><a href=./basic-usage/multivariate/>Multivariate analysis</a><ul><li data-nav-id=/basic-usage/multivariate/pca/ title="Principal Component Analysis (PCA)" class=dd-item><a href=./basic-usage/multivariate/pca/>Principal Component Analysis (PCA)</a></li></ul></li><li data-nav-id=/basic-usage/clustering/ title=Clustering class=dd-item><a href=./basic-usage/clustering/>Clustering</a></li></ul></li><li data-nav-id=/advanced-use/ title="Advanced Use" class=dd-item><a href=./advanced-use/>Advanced Use</a><ul><li data-nav-id=/advanced-use/integration/ title="Integration with MATLAB" class=dd-item><a href=./advanced-use/integration/>Integration with MATLAB</a></li><li data-nav-id=/advanced-use/extending/ title="Extending SpectralAnalysis" class=dd-item><a href=./advanced-use/extending/>Extending SpectralAnalysis</a></li></ul></li><li data-nav-id=/tutorials/ title=Tutorials class=dd-item><a href=./tutorials/>Tutorials</a></li><li data-nav-id=/roadmap/ title="Development Roadmap" class=dd-item><a href=./roadmap/>Development Roadmap</a></li></ul><section id=footer><p>Built with <a href=https://github.com/matcornic/hugo-theme-learn><i class="fas fa-heart"></i></a>from <a href=https://getgrav.org>Grav</a> and <a href=https://gohugo.io/>Hugo</a></p></section></div></nav><section id=body><div id=overlay></div><div class="padding highlightable"><div id=head-tags></div><div id=body-inner><span id=sidebar-toggle-span><a href=# id=sidebar-toggle data-sidebar-toggle><i class="fas fa-bars"></i>navigation</a></span><h1 id=spectralanalysis>SpectralAnalysis</h1><p>SpectralAnalysis is analysis software for spectral imaging data, with a particular focus on mass spectrometry imaging data. SpectralAnalysis provides functionality for <a href=./basic-usage/visualisation/>data visualisation</a>, preprocessing, <a href=./basic-usage/region-of-interest#calculate-statistics>univariate statistics</a>, multivariate analysis and machine learning.</p><div class="notices info"></div><p><img src="./images/SpectralAnalysis-interface-1.3.0.png?width=45pc" alt="SpectralAnalysis Interface"></p><h4 id=download>Download</h4><ul><li><p><a href=https://github.com/AlanRace/SpectralAnalysis/releases/>Get the latest standalone version</a>.</p></li><li><p><a href=https://github.com/AlanRace/SpectralAnalysis>Get the latest source code</a>.</p></li></ul><p>If downloading the source, please be aware that the latest version of <a href=https://github.com/AlanRace/MOOGL/tree/master>MOOGL</a> must also be downloaded and included in the <code>SpectralAnalysis\src\gui\MOOGL</code> folder.</p></div></div><div id=navigation><a class="nav nav-next" href=./installation/ title=Installation style=margin-right:0><i class="fa fa-chevron-right"></i></a></div></section><div style=left:-1000px;overflow:scroll;position:absolute;top:-1000px;border:none;box-sizing:content-box;height:200px;margin:0;padding:0;width:200px><div style=border:none;box-sizing:content-box;height:200px;margin:0;padding:0;width:200px></div></div><script src=./js/clipboard.min.js></script><script src=./js/perfect-scrollbar.min.js></script><script src=./js/perfect-scrollbar.jquery.min.js></script><script src=./js/jquery.sticky.js></script><script src=./js/featherlight.min.js></script><script src=./js/highlight.pack.js></script><script>hljs.initHighlightingOnLoad();</script><script src=./js/modernizr.custom-3.6.0.js></script><script src=./js/learn.js></script><script src=./js/hugo-learn.js></script><link href=./mermaid/mermaid.css rel=stylesheet><script src=./mermaid/mermaid.js></script><script>mermaid.initialize({startOnLoad:true});</script></body></html>
<span data-search-clear><i class="fas fa-times"></i></span></div><script type=text/javascript src=./js/lunr.min.js></script><script type=text/javascript src=./js/auto-complete.js></script><script type=text/javascript>var baseurl="";</script><script type=text/javascript src=./js/search.js></script></div><div class=highlightable><ul class=topics><li data-nav-id=/installation/ title=Installation class=dd-item><a href=./installation/>Installation</a></li><li data-nav-id=/basic-usage/ title="General Use" class=dd-item><a href=./basic-usage/>General Use</a><ul><li data-nav-id=/basic-usage/load-data/ title="Load data" class=dd-item><a href=./basic-usage/load-data/>Load data</a><ul><li data-nav-id=/basic-usage/load-data/parser/ title=Parser class=dd-item><a href=./basic-usage/load-data/parser/>Parser</a></li><li data-nav-id=/basic-usage/load-data/continuous-vs-profile/ title="Continuous vs Profile" class=dd-item><a href=./basic-usage/load-data/continuous-vs-profile/>Continuous vs Profile</a></li><li data-nav-id=/basic-usage/load-data/data-representation/ title="Data Representation" class=dd-item><a href=./basic-usage/load-data/data-representation/>Data Representation</a></li></ul></li><li data-nav-id=/basic-usage/visualisation/ title="Data visualisation" class=dd-item><a href=./basic-usage/visualisation/>Data visualisation</a></li><li data-nav-id=/basic-usage/region-of-interest/ title="Region of Interest" class=dd-item><a href=./basic-usage/region-of-interest/>Region of Interest</a></li><li data-nav-id=/basic-usage/ensure-consistent-mz-axis/ title="Ensure consistent m/z axis" class=dd-item><a href=./basic-usage/ensure-consistent-mz-axis/>Ensure consistent m/z axis</a></li><li data-nav-id=/basic-usage/preprocessing/ title="Spectral Preprocessing" class=dd-item><a href=./basic-usage/preprocessing/>Spectral Preprocessing</a><ul><li data-nav-id=/basic-usage/preprocessing/normalisation/ title=Normalisation class=dd-item><a href=./basic-usage/preprocessing/normalisation/>Normalisation</a></li></ul></li><li data-nav-id=/basic-usage/spectral-representation/ title="Spectral Representation" class=dd-item><a href=./basic-usage/spectral-representation/>Spectral Representation</a></li><li data-nav-id=/basic-usage/data-reduction/ title="Data Reduction" class=dd-item><a href=./basic-usage/data-reduction/>Data Reduction</a></li><li data-nav-id=/basic-usage/multivariate/ title="Multivariate analysis" class=dd-item><a href=./basic-usage/multivariate/>Multivariate analysis</a><ul><li data-nav-id=/basic-usage/multivariate/pca/ title="Principal Component Analysis (PCA)" class=dd-item><a href=./basic-usage/multivariate/pca/>Principal Component Analysis (PCA)</a></li></ul></li><li data-nav-id=/basic-usage/clustering/ title=Clustering class=dd-item><a href=./basic-usage/clustering/>Clustering</a></li></ul></li><li data-nav-id=/advanced-use/ title="Advanced Use" class=dd-item><a href=./advanced-use/>Advanced Use</a><ul><li data-nav-id=/advanced-use/integration/ title="Integration with MATLAB" class=dd-item><a href=./advanced-use/integration/>Integration with MATLAB</a></li><li data-nav-id=/advanced-use/extending/ title="Extending SpectralAnalysis" class=dd-item><a href=./advanced-use/extending/>Extending SpectralAnalysis</a></li></ul></li><li data-nav-id=/tutorials/ title=Tutorials class=dd-item><a href=./tutorials/>Tutorials</a></li><li data-nav-id=/roadmap/ title="Development Roadmap" class=dd-item><a href=./roadmap/>Development Roadmap</a></li></ul><section id=footer><p>Built with <a href=https://github.com/matcornic/hugo-theme-learn><i class="fas fa-heart"></i></a>from <a href=https://getgrav.org>Grav</a> and <a href=https://gohugo.io/>Hugo</a></p></section></div></nav><section id=body><div id=overlay></div><div class="padding highlightable"><div id=head-tags></div><div id=body-inner><span id=sidebar-toggle-span><a href=# id=sidebar-toggle data-sidebar-toggle><i class="fas fa-bars"></i>navigation</a></span><h1 id=spectralanalysis>SpectralAnalysis</h1><p>SpectralAnalysis is analysis software for spectral imaging data, with a particular focus on mass spectrometry imaging data. SpectralAnalysis provides functionality for <a href=./basic-usage/visualisation/>data visualisation</a>, preprocessing, <a href=./basic-usage/region-of-interest#calculate-statistics>univariate statistics</a>, multivariate analysis and machine learning.</p><div class="notices info"></div><p><img src="./images/SpectralAnalysis-interface-1.3.0.png?width=45pc" alt="SpectralAnalysis Interface"></p><h4 id=download>Download</h4><ul><li><p><a href=https://github.com/AlanRace/SpectralAnalysis/releases/>Get the latest standalone version</a>.</p></li><li><p><a href=https://github.com/AlanRace/SpectralAnalysis>Get the latest source code</a>.</p></li></ul></div></div><div id=navigation><a class="nav nav-next" href=./installation/ title=Installation style=margin-right:0><i class="fa fa-chevron-right"></i></a></div></section><div style=left:-1000px;overflow:scroll;position:absolute;top:-1000px;border:none;box-sizing:content-box;height:200px;margin:0;padding:0;width:200px><div style=border:none;box-sizing:content-box;height:200px;margin:0;padding:0;width:200px></div></div><script src=./js/clipboard.min.js></script><script src=./js/perfect-scrollbar.min.js></script><script src=./js/perfect-scrollbar.jquery.min.js></script><script src=./js/jquery.sticky.js></script><script src=./js/featherlight.min.js></script><script src=./js/highlight.pack.js></script><script>hljs.initHighlightingOnLoad();</script><script src=./js/modernizr.custom-3.6.0.js></script><script src=./js/learn.js></script><script src=./js/hugo-learn.js></script><link href=./mermaid/mermaid.css rel=stylesheet><script src=./mermaid/mermaid.js></script><script>mermaid.initialize({startOnLoad:true});</script></body></html>
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