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22 Open 51 Closed
22 Open 51 Closed
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Issues list

d4tools create should not count deletion parts of reads when calculation coverage.
#99 opened Jan 23, 2025 by ghuls
1
d4tools create can create wrong data for the last entry of a chromosome when writing non-compressed data.
#98 opened Jan 22, 2025 by ghuls
Building wheel for pyd4 (pyproject.toml) did not run successfully
#96 opened Jan 13, 2025 by pontushojer
2
d4tools stat - index out of bounds
#95 opened Jan 13, 2025 by pontushojer
8
Pip install still failing. Error is now:
#94 opened Dec 12, 2024 by tito-abbo
1
Compilation error when installing pyd4 on Python 3.12 using pip
#92 opened Nov 11, 2024 by Lycidas97
Efficiently summing coverage tracks from multiple d4 files
#82 opened Jun 24, 2024 by percyfal
3
Wrong mean coverage values from indexed d4 file
#80 opened Jun 5, 2024 by Jakob37
Cut a new release please
#73 opened Jul 13, 2023 by mrvollger
5
[ENH] convert BED to d4 file.
#72 opened Jun 22, 2023 by ghuls
misaligned pointer dereference in read_next_value
#71 opened Jun 19, 2023 by shinmao
Bug: OSError: memory map must have a non-zero length in load_to_np_impl
#70 opened Jan 24, 2023 by mrvollger
1
d4tools stats - Show statistics across multiple regions
#69 opened Jan 9, 2023 by pontushojer
d4tools view - Flag --region-file not working.
#68 opened Jan 9, 2023 by pontushojer
Part size limit causing odd results every 10M bases?
#67 opened Nov 3, 2022 by onordesjo
no apparent size reduction of multi-track files as function of no of samples
#64 opened Sep 19, 2022 by percyfal
1
Enable create to take input from stdin
#60 opened Aug 23, 2022 by jdidion
1
pyd4 manylinux wheel
#49 opened Apr 8, 2022 by nathanweeks
Which d4utils version to use?
#35 opened Oct 5, 2021 by javiercguard
3
[ENH] Is there utility for single-cell genomics?
#27 opened Aug 19, 2021 by arq5x
18
Suggestion: automate binary deployment w/ github releases
#11 opened Nov 25, 2020 by snystrom
c-api doesn't allow setting parameters when writing a new d4 file
#3 opened Oct 5, 2020 by brentp
2
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