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error: failed to run custom build command for `d4-hts v0.3.5`
Caused by:
process didn't exit successfully: `/tmp/pip-install-3kya479p/pyd4_c078b6dd33b54f9f9f02cefe521e2e41/target/release/build/d4-hts-1b44fec096ee500a/build-script-build` (exit status: 101)
--- stderr
+ pushd /tmp/pip-install-3kya479p/pyd4_c078b6dd33b54f9f9f02cefe521e2e41/target/release/build/d4-hts-8e2eee3158639a84/out
+ HTSLIB_VERSION=1.11
+ rm -rf /tmp/pip-install-3kya479p/pyd4_c078b6dd33b54f9f9f02cefe521e2e41/target/release/build/d4-hts-8e2eee3158639a84/out/htslib
+ git clone -b 1.11 https://github.com/samtools/htslib.git
Note: checking out 'a7a90fe913f8a466f32f6e284cf46653944acd6f'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:
git checkout -b new_branch_name
+ cd htslib
+ cat
+ perl -i -pe 's/hfile_libcurl\.o//g' Makefile
+ is_musl
++ echo x86_64-unknown-linux-gnu
++ grep musl
+ '[' '!' -z ']'
+ return 1
+ curl https://zlib.net/zlib-1.2.11.tar.gz
+ tar xz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 315 100 315 0 0 722 0 --:--:-- --:--:-- --:--:-- 724
gzip: stdin: not in gzip format
tar: Child returned status 1
tar: Error is not recoverable: exiting now
thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', /n/home12/tsackton/.cargo/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.3.5/build.rs:34:5
note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace
warning: build failed, waiting for other jobs to finish...
error: build failed
error: cargo failed with code: 101
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for pyd4
Failed to build pyd4
ERROR: Could not build wheels for pyd4, which is required to install pyproject.toml-based projects
I think the problem is that zlib is now at version 1.2.12, so the hard-coded url does not work.
I think the problem is that zlib is now at version 1.2.12, so the hard-coded url does not work.
Originally posted by @tsackton in #48 (comment)
The text was updated successfully, but these errors were encountered: