Merge branch '20191223efrat'

zhou-lab · Dec 23, 2019 · 736ebef · 736ebef
2 parents d8d5a6d + 5e253d0
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diff --git a/Biscuit_QC/some_name_bga.bed b/Biscuit_QC/some_name_bga.bed
diff --git a/README.md b/README.md
@@ -101,7 +101,7 @@ $ biscuit vcf2bed -k 10 -t cg input.vcf.gz
 
 A bash script is provided to simplify QC procedure.
 ```bash
-$ ./scripts/QC.sh -v input.vcf setup_file sample.name input.bam
+$ ./scripts/QC.sh -v input.vcf assets_directory genome.fa sample.name input.bam
 ```
 generates QC information that can be picked up by MultiQC. Setup files for [hg19](http://zwdzwd.io/BISCUITqc/hg19_QC_assets.zip), [hg38](http://zwdzwd.io/BISCUITqc/hg38_QC_assets.zip) and [mm10](http://zwdzwd.io/BISCUITqc/mm10_QC_assets.zip) are provided. Other genome builds can be built following the same format.