Better visualization for cryo-EM.
Still in dev and welcome to any suggestions and contributions!
INPUT: Usual cryo-EM file formats, including mrc(s) and star files.
OUTPUT: Either images or static html file.
Heavily uses Plotly to render interactive visualizations.
Besides making format conversions, this repo tries provide useful visualizations of the information in the star files outputted by RELION and other software.
Examples of the generated html files can be found in ./samples/output.
A few examples:
3D plot of orientation angles of particles in a half-sphere, with selectable attribute (color-coded) in the star file:
Histogram plot with selectable attribute in the star file:
Scatter plot with predefined X and Y axis and selectable attribute (color-coded) in the star file:
Scatter plot with predefined X and Y axis and a color-code attribute in multiple star files (for tracking the relationships of as many as three attributes in a process with multiple iterations, e.g. 3D refinement):
Micrograph image overlaid with picked particle coordinates, with sliders for merit-based thresholding and changable diameters:
