remove website

.Rbuildignore

@@ -16,3 +16,4 @@ logo.png
 ggtree_sticker.R
 site_src
 ggtree.png
+^CONDUCT\.md$

CONDUCT.md

@@ -0,0 +1,25 @@
+# Contributor Code of Conduct
+
+As contributors and maintainers of this project, we pledge to respect all people who 
+contribute through reporting issues, posting feature requests, updating documentation,
+submitting pull requests or patches, and other activities.
+
+We are committed to making participation in this project a harassment-free experience for
+everyone, regardless of level of experience, gender, gender identity and expression,
+sexual orientation, disability, personal appearance, body size, race, ethnicity, age, or religion.
+
+Examples of unacceptable behavior by participants include the use of sexual language or
+imagery, derogatory comments or personal attacks, trolling, public or private harassment,
+insults, or other unprofessional conduct.
+
+Project maintainers have the right and responsibility to remove, edit, or reject comments,
+commits, code, wiki edits, issues, and other contributions that are not aligned to this 
+Code of Conduct. Project maintainers who do not follow the Code of Conduct may be removed 
+from the project team.
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by 
+opening an issue or contacting one or more of the project maintainers.
+
+This Code of Conduct is adapted from the Contributor Covenant 
+(http:contributor-covenant.org), version 1.0.0, available at 
+http://contributor-covenant.org/version/1/0/0/

Makefile

@@ -4,7 +4,7 @@ PKGSRC  := $(shell basename `pwd`)
 
 all: rd check clean
 
-alldocs: site rd readme
+alldocs: rd readme
 
 rd:
 	Rscript -e 'library(methods); devtools::document()'
@@ -49,25 +49,6 @@ clean:
 	cd ..;\
 	$(RM) -r $(PKGNAME).Rcheck/
 
-site:
-	cd site_src;\
-	ln -s ../../software/themes themes;\
-	Rscript -e 'blogdown::build_site()';\
-	rm themes;\
-	cd ..
-
-vignette:
-	cd site_src/vignettes;\
-	Rscript -e 'ff = list.files(pattern=".R|rmd"); sapply(ff, function(f) rmarkdown::render(f))';\
-	mv *html ../../docs/vignettes/
-
-preview:
-	cd site_src;\
-	ln -s ../../software/themes themes;\
-	Rscript -e 'blogdown::serve_site()';\
-	rm themes;\
-	cd ..
-
 
 gitmaintain:
 	git gc --auto;\
@@ -89,19 +70,6 @@ push:
 	git push origin master
 
 
-# mkdocs: mdfiles
-# 	cd mkdocs;\
-# 	mkdocs build;\
-# 	cd ../docs;\
-# 	rm -rf fonts;\
-# 	rm -rf css/font-awesome*
-
-# mdfiles:
-# 	cd mkdocs;\
-# 	Rscript -e 'source("render.R")';\
-# 	cd docs;\
-# 	ln -f -s ../mysoftware/* ./
-
 # svnignore:
 # 	svn propset svn:ignore -F .svnignore .
 

README.Rmd

@@ -81,4 +81,9 @@ __G Yu__, DK Smith, H Zhu, Y Guan, TTY Lam^\*^. ggtree: an R package for visuali
 
 
 
+## Contributing
+
+We welcome any contributions! By participating in this project you agree to
+abide by the terms outlined in the [Contributor Code of Conduct](CONDUCT.md).
+
 

README.md

@@ -38,3 +38,8 @@ Please cite the following article when using `ggtree`:
 [![download](http://www.bioconductor.org/shields/downloads/ggtree.svg)](https://bioconductor.org/packages/stats/bioc/ggtree) [![total](https://img.shields.io/badge/downloads-25396/total-blue.svg?style=flat)](https://bioconductor.org/packages/stats/bioc/ggtree) [![month](https://img.shields.io/badge/downloads-1211/month-blue.svg?style=flat)](https://bioconductor.org/packages/stats/bioc/ggtree)
 
 <img src="https://guangchuangyu.github.io/software/ggtree/index_files/figure-html/dlstats-1.png" width="890"/>
+
+Contributing
+------------
+
+We welcome any contributions! By participating in this project you agree to abide by the terms outlined in the [Contributor Code of Conduct](CONDUCT.md).