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| citHeader("To cite ggtree in publications use:") | ||
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| bib_ggtree <- getFromNamespace("bib_ggtree", 'yulab.utils') | ||
| bibentry( | ||
| bibtype = "book", | ||
| title = "Data Integration, Manipulation and Visualization of Phylogenetic Treess", | ||
| author = person("Guangchuang", "Yu"), | ||
| publisher = "Chapman and Hall/{CRC}", | ||
| year = "2022", | ||
| edition = "1st edition", | ||
| doi = "10.1201/9781003279242", | ||
| url = "https://www.amazon.com/Integration-Manipulation-Visualization-Phylogenetic-Computational-ebook/dp/B0B5NLZR1Z/", | ||
| textVersion = paste("Guangchuang Yu. (2022).", | ||
| "Data Integration, Manipulation and Visualization of Phylogenetic Trees (1st edition).", | ||
| "Chapman and Hall/CRC. doi:10.1201/9781003279242") | ||
| ) | ||
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| bib_ggtree('book') | ||
| bibentry( | ||
| bibtype = "article", | ||
| title = "Ggtree: A serialized data object for visualization of a phylogenetic tree and annotation data", | ||
| author = personList( | ||
| person("Shuangbin", "Xu"), | ||
| person("Lin", "Li"), | ||
| person("Xiao", "Luo"), | ||
| person("Meijun", "Chen"), | ||
| person("Wenli", "Tang"), | ||
| person("Li", "Zhan"), | ||
| person("Zehan", "Dai"), | ||
| person("Tommy T. Lam"), | ||
| person("Yi", "Guan"), | ||
| person("Guangchuang", "Yu") | ||
| ), | ||
| year = "2022", | ||
| journal = "iMeta", | ||
| volume = "1", | ||
| number = "4", | ||
| pages = "e56", | ||
| doi = "10.1002/imt2.56", | ||
| url = "https://onlinelibrary.wiley.com/doi/full/10.1002/imt2.56", | ||
| textVersion = paste("Shuangbin Xu, Lin Li, Xiao Luo, Meijun Chen, Wenli Tang, Li Zhan, Zehan Dai, Tommy T. Lam, Yi Guan, Guangchuang Yu.", | ||
| "Ggtree: A serialized data object for visualization of a phylogenetic tree and annotation data.", | ||
| "iMeta 2022, 4(1):e56. doi:10.1002/imt2.56") | ||
| ) | ||
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| bib_ggtree('imeta2022') | ||
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| bib_ggtree('cpb2020') | ||
| bibentry( | ||
| bibtype = "article", | ||
| title = "Using ggtree to Visualize Data on Tree-Like Structures", | ||
| author = person("Guangchuang", "Yu"), | ||
| year = "2020", | ||
| journal = "Current Protocols in Bioinformatics", | ||
| volume = "69", | ||
| pages = "e96", | ||
| number = "1", | ||
| url = "https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.96", | ||
| doi = "10.1002/cpbi.96", | ||
| textVersion = paste("Guangchuang Yu.", | ||
| "Using ggtree to visualize data on tree-like structures.", | ||
| "Current Protocols in Bioinformatics, 2020, 69:e96. doi: 10.1002/cpbi.96") | ||
| ) | ||
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| bib_ggtree('mbe2018') | ||
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| bib_ggtree('mee2017') | ||
| bibentry( | ||
| bibtype = "article", | ||
| title = "Two methods for mapping and visualizing associated data on phylogeny using ggtree.", | ||
| author = personList( | ||
| as.person("Guangchuang Yu"), | ||
| as.person("Tommy Tsan-Yuk Lam"), | ||
| as.person("Huachen Zhu"), | ||
| as.person("Yi Guan") | ||
| ), | ||
| year = "2018", | ||
| journal = "Molecular Biology and Evolution", | ||
| volume = "35", | ||
| issue = "2", | ||
| number = "", | ||
| pages = "3041-3043", | ||
| doi = "10.1093/molbev/msy194", | ||
| PMID = "", | ||
| url = "https://academic.oup.com/mbe/article/35/12/3041/5142656", | ||
| textVersion = paste("Guangchuang Yu, Tommy Tsan-Yuk Lam, Huachen Zhu, Yi Guan.", | ||
| "Two methods for mapping and visualizing associated data on phylogeny using ggtree.", | ||
| "Molecular Biology and Evolution 2018, 35(2):3041-3043. doi: 10.1093/molbev/msy194") | ||
| ) | ||
|
|
||
| bibentry( | ||
| bibtype = "article", | ||
| title = "ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data.", | ||
| author = personList( | ||
| as.person("Guangchuang Yu"), | ||
| as.person("David Smith"), | ||
| as.person("Huachen Zhu"), | ||
| as.person("Yi Guan"), | ||
| as.person("Tommy Tsan-Yuk Lam") | ||
| ), | ||
| year = "2017", | ||
| journal = "Methods in Ecology and Evolution", | ||
| volume = "8", | ||
| issue = "1", | ||
| number = "", | ||
| pages = "28-36", | ||
| doi = "10.1111/2041-210X.12628", | ||
| PMID = "", | ||
| url = "http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12628/abstract", | ||
| textVersion = paste("Guangchuang Yu, David Smith, Huachen Zhu, Yi Guan, Tommy Tsan-Yuk Lam.", | ||
| "ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data.", | ||
| "Methods in Ecology and Evolution 2017, 8(1):28-36. doi:10.1111/2041-210X.12628") | ||
| ) | ||
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|