Manual fix. Trying to fix barplot

yana-safonova · Oct 8, 2016 · ac42eb8 · ac42eb8
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diff --git a/diversity_analyzer_manual.html b/diversity_analyzer_manual.html
@@ -28,9 +28,9 @@ <h1>Diversity Analyzer 1.0 manual</h1>
 &nbsp;&nbsp;&nbsp;&nbsp;4.2. <a href="#shm_details">SHM details file</a><br>
 &nbsp;&nbsp;&nbsp;&nbsp;4.3. <a href="#v_alignments">V alignments file</a><br>
 
-5. <a href = "#plot_descr">Plot description</a><br>
+<!--- 5. <a href = "#plot_descr">Plot description</a><br> --->
 
-6. <a href="#feedback">Feedback and bug reports</a><br>
+5. <a href="#feedback">Feedback and bug reports</a><br>
 <!--- &nbsp;&nbsp;&nbsp;&nbsp;5.1. <a href="#citation">Citation</a><br> --->
 
 <!-- -------- --->
@@ -354,6 +354,7 @@ <h3 id = "v_alignments">4.3. V alignments file</h3>
 Please not that start position (<code>START_POS</code> field in a header) and end position (<code>END_POS</code> field) are inclusive.
 
 <!--- -------------------------------------------------------------------- --->
+<!---
 <h2 id = "plot_descr">5. Plot description</h2>
 Diversity Analyzer reports plots in PNG and PDF formats.
 All plots can be found in <b>plots</b> directory.
@@ -376,9 +377,6 @@ <h3 id = "shm_plots">5.2. SHM plots</h3>
     </li>
 </ul>
 
-
-
-
 <h3 id = "cdr_plots">5.3. CDR plots</h3>
 If a chain type (IGH / IGK / IGL / TRA / TRB / TRG / TRD) is presented in <b>input_sequences.fasta</b>,
 Diversity Analyzer reports the following plots for CDR1, CDR2 and CDR3 for sequences of this chain type:
@@ -388,10 +386,10 @@ <h3 id = "cdr_plots">5.3. CDR plots</h3>
         To output variability plots, Diversity Analyzer selects length value that is presented by the largest number of CDRs.</li>
 </ul>
 All CDR plots can be found in <b>plots/cdr_plots</b> directory.
-
+--->
 <!--- -------------------------------------------------------------------- --->
 <a id="feedback"></a>
-<h2>6. Feedback and bug reports</h2>
+<h2>5. Feedback and bug reports</h2>
 Your comments, bug reports, and suggestions are very welcome.
 They will help us to further improve Diversity Analyzer.
 <br><br>

diff --git a/py/diversity_stats_visualizer/visualize_cdr_stats.py b/py/diversity_stats_visualizer/visualize_cdr_stats.py
@@ -170,7 +170,8 @@ def visualize_largest_group_aa_variability(labeling_df, region, region_name, out
                 abun_.append(aa_large_abun[i])
             else:
                 abun_.append(0)
-        sns.barplot(x_, abun_, color = aa_colors[amino_acids.index(aa)])
+        df = pd.DataFrame({'x': x_, 'y' : abun_})
+        sns.barplot(x = 'x', y = 'y', data = df, color = aa_colors[amino_acids.index(aa)])
     plt.xticks(range(0, len(aa_large_abun)), aa_large_acid, fontsize = 14)
     plt.yticks(fontsize = 14)
     plt.xlabel('The most abundant amino acid', fontsize = 16)