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DataJoint Element for functional calcium imaging data acquired with the | ||
[UCLA Miniscope](https://github.com/Aharoni-Lab/Miniscope-v4) and | ||
[Miniscope DAQ](https://github.com/Aharoni-Lab/Miniscope-DAQ-QT-Software) | ||
acquisition system, and analyzed with `CaImAn`. DataJoint Elements collectively | ||
standardize and automate data collection and analysis for neuroscience experiments. | ||
Each Element is a modular pipeline for data storage and processing with corresponding | ||
database tables that can be combined with other Elements to assemble a fully functional | ||
pipeline. | ||
[Miniscope DAQ](https://github.com/Aharoni-Lab/Miniscope-DAQ-QT-Software) acquisition | ||
system, and analyzed with [CaImAn](https://github.com/flatironinstitute/CaImAn). | ||
DataJoint Elements collectively standardize and automate data collection and analysis | ||
for neuroscience experiments. Each Element is a modular pipeline for data storage and | ||
processing with corresponding database tables that can be combined with other Elements | ||
to assemble a fully functional pipeline. | ||
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 | ||
## Experiment Flowchart | ||
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Installation and usage instructions can be found at the | ||
[Element documentation](https://datajoint.com/docs/elements/element-miniscope). | ||
 | ||
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## Data Pipeline Diagram | ||
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## Getting Started | ||
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+ Install from PyPI | ||
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```bash | ||
pip install element-miniscope | ||
``` | ||
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+ [Interactive tutorial on GitHub Codespaces](https://github.com/datajoint/workflow-miniscope#interactive-tutorial) | ||
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+ [Documentation](https://datajoint.com/docs/elements/element-miniscope) | ||
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## Support | ||
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+ If you need help getting started or run into any errors, please contact our team by email at [email protected]. |