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Merge pull request #3 from wwPDB/hatch
Convert to using hatch for build tool
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| [submodule "wwpdb/mock-data"] | ||
| path = wwpdb/mock-data | ||
| url = ../py-onedep_mock_data.git | ||
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| Original file line number | Diff line number | Diff line change |
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| [build-system] | ||
| requires = ["hatchling"] | ||
| build-backend = "hatchling.build" | ||
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| [project] | ||
| name = "wwpdb.utils.oe-util" | ||
| dynamic = ["version"] | ||
| description = "wwPDB workflow engine utils" | ||
| readme = "README.md" | ||
| license = "Apache-2.0" | ||
| authors = [ | ||
| { name = "Ezra Peisach", email = "[email protected]" }, | ||
| ] | ||
| classifiers = [ | ||
| "Development Status :: 3 - Alpha", | ||
| "Intended Audience :: Developers", | ||
| "License :: OSI Approved :: Apache Software License", | ||
| "Natural Language :: English", | ||
| "Programming Language :: Python", | ||
| "Programming Language :: Python :: 3", | ||
| "Programming Language :: Python :: 3.6", | ||
| "Programming Language :: Python :: 3.7", | ||
| ] | ||
| dependencies = [ | ||
| "mmcif.utils", | ||
| "OpenEye-toolkits ; python_version >= '3'", | ||
| "OpenEye-toolkits-python2.7-ucs2-linux-x64 == 2016.6.1; python_version == '2.7' and sys_platform=='linux2'", | ||
| "wwpdb.utils.cc_dict_util >= 0.2", | ||
| ] | ||
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| requires-python = ">=3.6" | ||
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| # https://hatch.pypa.io/latest/how-to/environment/dependency-resolution/ | ||
| [project.optional-dependencies] | ||
| dev = [ | ||
| "check-manifest", | ||
| ] | ||
| test = [ | ||
| "coverage", | ||
| ] | ||
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| [project.scripts] | ||
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| [project.urls] | ||
| Homepage = "https://github.com/rcsb/py-wwpdb_apps_wf_engine_utils" | ||
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| [tool.hatch.version] | ||
| path = "wwpdb/utils/oe_util/__init__.py" | ||
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| [tool.hatch.build.targets.sdist] | ||
| include = [ | ||
| "/wwpdb", | ||
| ] | ||
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| exclude = ["/wwpdb/mock-data", "/wwpdb/utils/oe_util/Archive"] | ||
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| [tool.hatch.build.targets.wheel] | ||
| packages = ["wwpdb"] | ||
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| exclude = ["/wwpdb/mock-data", "/wwpdb/utils/oe_util/Archive"] | ||
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| #=================================== Ruff basics =============================# | ||
| [tool.ruff] | ||
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| line-length = 120 # 120 is hatch's default via 'hatch init' | ||
| include = [ | ||
| "*.py", # Source | ||
| "pyproject.toml", # This file (RUF rules only) | ||
| "*.ipynb", # Jupyter notebooks | ||
| ] | ||
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| exclude = ["Archive"] | ||
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| # | ||
| #=================================== Ruff lint ==============================# | ||
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| [tool.ruff.lint] | ||
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| # | ||
| # ------------------------- Ruff misc. options ---------------------- | ||
| preview = true | ||
| explicit-preview-rules = true | ||
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| ignore = [ | ||
| "C402", # Unnecessary generator (rewrite as a `dict` comprehension) | ||
| "EXE001", # Shebang is present but file is not executabl | ||
| "FBT002", # Boolean default positional argument in function definition | ||
| "FBT001", # Boolean-typed positional argument in function definition | ||
| "FURB113", # Use `stPL.extend(...)` instead of repeatedly calling `stPL.append()` | ||
| "INP001", # File `xx` is part of an implicit namespace package. Add an `__init__.py | ||
| "N801", # Class name `markdownTests` should use CapWords convention | ||
| "N802", # Function name should be lowercase | ||
| "N803", # Argument name should be lowercase | ||
| "N806", # in function should be lowercase | ||
| "N815", # Caiable... in class shope should not be mixedCase | ||
| "N816", # Variable in global scope should not be mixedCase | ||
| "N999", # Invalid module name, | ||
| "PERF401", # Use a list comprehension to create a transformed list | ||
| "PERF403", # Use a dictionary comprehension instead of a for-loop | ||
| "PLR1714", # Consider merging multiple comparisons | ||
| "PLR2004", # Magic value used in comparison, consider replacing | ||
| "PLR6201", # Use a `set` literal when testing for membership | ||
| "PLR6301", # Method `` could be a function, class method, or static method | ||
| "PLW1514", # `open` in text mode without explicit `encoding` argument | ||
| "PT009", # Use a regular `assert` instead of unittest-style `assertGreater` | ||
| "RET504", # Unnecessary assignment to `X` before `return` statement | ||
| "RUF100", # RUF REMOVES FLAKE8 noqa! | ||
| "S110", # `try`-`except`-`pass` detected, consider logging the exception | ||
| "SIM102", # Use a single `if` statement instead of nested `if` statements | ||
| "SIM103", # Return the condition directly | ||
| "SIM108", # Use ternary operator | ||
| "SIM115", # Use context handler for opening files | ||
| "TRY300", # Consider moving this statement to an `else` block | ||
| "TRY400", # Use `logging.exception` instead of `logging.error` | ||
| "TRY401", # Redundant exception object included in `logging.exception` call | ||
| "UP008", # Use `super()` instead of `super(__class__, self)` | ||
| "UP031" # Use format specifiers instead of percent format | ||
| ] | ||
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| # -------------------- default environment scripts ------------------ | ||
| [tool.hatch.envs.default] | ||
| skip-install = true | ||
| dependencies = ["mypy", "ruff >=0.6.9", "wwpdb.utils.testing", "OpenEye-toolkits~=2022.1.1"] | ||
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| [tool.hatch.envs.default.env-vars] | ||
| PIP_EXTRA_INDEX_URL = "https://pypi.anaconda.org/OpenEye/simple" | ||
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| [tool.hatch.envs.default.scripts] | ||
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| # 'format' formats and fixes issues but does not complain | ||
| format = [ | ||
| "ruff format", | ||
| "ruff check --fix-only", | ||
| ] | ||
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| # 'format-python' just excludes Prettier | ||
| format-python = ["ruff format", "ruff check --fix-only"] | ||
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| # 'check' only checks but never fixes | ||
| check = ["ruff check --no-fix .", "mypy --non-interactive --install-types -p wwpdb -p tests"] | ||
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| # only checks with ruff (mypy has a lot of false positives) | ||
| check-ruff = "ruff check --no-fix . {args}" | ||
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| # to complement 'check-ruff' | ||
| check-mypy = "mypy --non-interactive --install-types wwpdb tests {args}" | ||
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| # only check security via Bandit; we require these rules to pass | ||
| check-security = "ruff check --select S --no-fix ." | ||
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| # ----------------------- testing environment ---------------- | ||
| [tool.hatch.envs.hatch-test] | ||
| dependencies = ["tox"] | ||
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| [tool.hatch.envs.hatch-test.scripts] | ||
| run = ["tox"] | ||
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| # ------------------------- Mypy disable --------- | ||
| [[tool.mypy.overrides]] | ||
| module = ["wwpdb.*", "openeye.*", "mmcif_utils.*", "mmcif.*"] | ||
| ignore_missing_imports = true | ||
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| [tool.mypy] | ||
| exclude = [ | ||
| "test-output", | ||
| ] | ||
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| # ------------------------ ruff disable until typing added | ||
| [tool.ruff.lint.per-file-ignores] | ||
| "awwpdb/utils/config/ConfigInfoData.py" = ["RUF012"] # typing.ClassVar | ||
| "wwpdb/utils/config/ConfigInfoData.py" = ["SLF001", "RUF012", "F401"] # Private member access, should use typing.ClassVar, do not remove unused imports | ||
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