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Add spectral peak list lexer and parser grammars for NmrPipe, NmrView…
…, Sparky, and Xeasy Add spectral peak list file types for ARIA (nm-pea-ari) and XWIN-NMR (nm-pea-xwi)
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wwpdb/utils/tests-nmr/antlr-grammars-v4.10/NmrPipePKLexer.g4
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| /* | ||
| NmrPipe PK (Spectral peak list) lexer grammar for ANTLR v4. | ||
| Copyright 2024 Masashi Yokochi | ||
| you may not use this file except in compliance with the License. | ||
| You may obtain a copy of the License at | ||
| http://www.apache.org/licenses/LICENSE-2.0 | ||
| Unless required by applicable law or agreed to in writing, software | ||
| distributed under the License is distributed on an "AS IS" BASIS, | ||
| WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| See the License for the specific language governing permissions and | ||
| limitations under the License. | ||
| */ | ||
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| lexer grammar NmrPipePKLexer; | ||
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| /* NmrPipe: Syntax | ||
| See also https://spin.niddk.nih.gov/NMRPipe/ | ||
| */ | ||
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| Data: 'DATA' -> pushMode(DATA_MODE); | ||
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| Vars: 'VARS' -> pushMode(VARS_MODE); | ||
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| Format: 'FORMAT' -> pushMode(FORMAT_MODE); | ||
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| Null_value: 'NULLVALUE' -> pushMode(NULL_VALUE_MODE); | ||
| Null_string: 'NULLSTRING' -> pushMode(NULL_STRING_MODE); | ||
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| Integer: ('+' | '-')? DECIMAL; | ||
| Float: ('+' | '-')? (DECIMAL | DEC_DOT_DEC); | ||
| Real: ('+' | '-')? (DECIMAL | DEC_DOT_DEC) ([Ee] ('+' | '-')? DECIMAL)?; | ||
| fragment DEC_DOT_DEC: (DECIMAL '.' DECIMAL) | ('.' DECIMAL); | ||
| fragment DEC_DIGIT: [0-9]; | ||
| fragment DECIMAL: DEC_DIGIT+; | ||
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| SHARP_COMMENT: '#'+ ~[\r\n]* '#'* ~[\r\n]* -> channel(HIDDEN); | ||
| EXCLM_COMMENT: '!'+ ~[\r\n]* '!'* ~[\r\n]* -> channel(HIDDEN); | ||
| SMCLN_COMMENT: ';'+ ~[\r\n]* ';'* ~[\r\n]* -> channel(HIDDEN); | ||
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| Simple_name: SIMPLE_NAME; | ||
| //Residue_number: Integer; | ||
| //Residue_name: SIMPLE_NAME; | ||
| //Atom_name: ALPHA_NUM ATM_NAME_CHAR*; | ||
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| fragment ALPHA: [A-Za-z]; | ||
| fragment ALPHA_NUM: ALPHA | DEC_DIGIT; | ||
| fragment START_CHAR: ALPHA_NUM | '_' | '-' | '+' | '.' | '*' | '#' | '?'; | ||
| fragment NAME_CHAR: START_CHAR | '\'' | '"'; | ||
| //fragment ATM_NAME_CHAR: ALPHA_NUM | '\''; | ||
| fragment SIMPLE_NAME: START_CHAR NAME_CHAR*; | ||
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| SPACE: [ \t\r\n]+ -> skip; | ||
| ENCLOSE_COMMENT: '{' (ENCLOSE_COMMENT | .)*? '}' -> channel(HIDDEN); | ||
| SECTION_COMMENT: ('#' | '!' | ';' | '\\' | '&' | '/' '/'+ | '*' '*'+ | '-' '-'+ | '+' '+'+ | '=' '='+ | 'REMARK') ' '* [\r\n]+ -> channel(HIDDEN); | ||
| LINE_COMMENT: ('#' | '!' | ';' | '\\' | '&' | '/' '/'+ | '*' '*'+ | '-' '-'+ | '+' '+'+ | '=' '='+ | 'REMARK') ~[\r\n]* -> channel(HIDDEN); | ||
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| mode DATA_MODE; | ||
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| X_axis_DA: 'X_AXIS'; | ||
| Y_axis_DA: 'Y_AXIS'; | ||
| Z_axis_DA: 'Z_AXIS'; | ||
| A_axis_DA: 'A_AXIS'; | ||
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| Ppm_value_DA: Float 'ppm'; | ||
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| Integer_DA: ('+' | '-')? DECIMAL; | ||
| Float_DA: ('+' | '-')? (DECIMAL | DEC_DOT_DEC); | ||
| Real_DA: ('+' | '-')? (DECIMAL | DEC_DOT_DEC) ([Ee] ('+' | '-')? DECIMAL)?; | ||
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| Simple_name_DA: SIMPLE_NAME; | ||
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| SPACE_DA: [ \t]+ -> skip; | ||
| RETURN_DA: [\r\n]+ -> popMode; | ||
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| //SECTION_COMMENT_DA: ('#' | '!' | ';' | '\\' | '&' | '/' '/'+ | '*' '*'+ | '-' '-'+ | '+' '+'+ | '=' '='+ | 'REMARK') ' '* [\r\n]+ -> channel(HIDDEN); | ||
| LINE_COMMENT_DA: ('#' | '!' | ';' | '\\' | '&' | '/' '/'+ | '*' '*'+ | '-' '-'+ | '+' '+'+ | '=' '='+ | 'REMARK') ~[\r\n]* -> channel(HIDDEN); | ||
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| mode VARS_MODE; | ||
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| Index: 'INDEX'; | ||
| X_axis: 'X_AXIS'; | ||
| Y_axis: 'Y_AXIS'; | ||
| Z_axis: 'Z_AXIS'; | ||
| A_axis: 'A_AXIS'; | ||
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| Dx: 'DX'; | ||
| Dy: 'DY'; | ||
| Dz: 'DZ'; | ||
| Da: 'DA'; | ||
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| X_ppm: 'X_PPM'; | ||
| Y_ppm: 'Y_PPM'; | ||
| Z_ppm: 'Z_PPM'; | ||
| A_ppm: 'A_PPM'; | ||
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| X_hz: 'X_HZ'; | ||
| Y_hz: 'Y_HZ'; | ||
| Z_hz: 'Z_HZ'; | ||
| A_hz: 'A_HZ'; | ||
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| Xw: 'XW'; | ||
| Yw: 'YW'; | ||
| Zw: 'ZW'; | ||
| Aw: 'AW'; | ||
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| Xw_hz: 'XW_HZ'; | ||
| Yw_hz: 'YW_HZ'; | ||
| Zw_hz: 'ZW_HZ'; | ||
| Aw_hz: 'AW_HZ'; | ||
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| X1: 'X1'; | ||
| X3: 'X3'; | ||
| Y1: 'Y1'; | ||
| Y3: 'Y3'; | ||
| Z1: 'Z1'; | ||
| Z3: 'Z3'; | ||
| A1: 'A1'; | ||
| A3: 'A3'; | ||
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| Height: 'HEIGHT'; | ||
| DHeight: 'DHEIGHT'; | ||
| Vol: 'VOL'; | ||
| Pchi2: 'PCHI2'; | ||
| Type: 'TYPE'; | ||
| Ass: 'ASS'; | ||
| ClustId: 'CLUSTID'; | ||
| Memcnt: 'MEMCNT'; | ||
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| Integer_VA: ('+' | '-')? DECIMAL; | ||
| Float_VA: ('+' | '-')? (DECIMAL | DEC_DOT_DEC); | ||
| Real_VA: ('+' | '-')? (DECIMAL | DEC_DOT_DEC) ([Ee] ('+' | '-')? DECIMAL)?; | ||
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| Simple_name_VA: SIMPLE_NAME; | ||
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| SPACE_VA: [ \t]+ -> skip; | ||
| RETURN_VA: [\r\n]+ -> popMode; | ||
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| //SECTION_COMMENT_VA: ('#' | '!' | ';' | '\\' | '&' | '/' '/'+ | '*' '*'+ | '-' '-'+ | '+' '+'+ | '=' '='+ | 'REMARK') ' '* [\r\n]+ -> channel(HIDDEN); | ||
| LINE_COMMENT_VA: ('#' | '!' | ';' | '\\' | '&' | '/' '/'+ | '*' '*'+ | '-' '-'+ | '+' '+'+ | '=' '='+ | 'REMARK') ~[\r\n]* -> channel(HIDDEN); | ||
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| mode FORMAT_MODE; | ||
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| Format_code: '%' DECIMAL? ('s' | 'd' | '.' DECIMAL 'f' | '+'? 'e'); | ||
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| SPACE_FO: [ \t]+ -> skip; | ||
| RETURN_FO: [\r\n]+ -> popMode; | ||
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| //SECTION_COMMENT_FO: ('#' | '!' | ';' | '\\' | '&' | '/' '/'+ | '*' '*'+ | '-' '-'+ | '+' '+'+ | '=' '='+ | 'REMARK') ' '* [\r\n]+ -> channel(HIDDEN); | ||
| LINE_COMMENT_FO: ('#' | '!' | ';' | '\\' | '&' | '/' '/'+ | '*' '*'+ | '-' '-'+ | '+' '+'+ | '=' '='+ | 'REMARK') ~[\r\n]* -> channel(HIDDEN); | ||
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| mode NULL_VALUE_MODE; | ||
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| Any_name_NV: ~[ \t\r\n]+; | ||
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| SPACE_NV: [ \t]+ -> skip; | ||
| RETURN_NV: [\r\n]+ -> popMode; | ||
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| mode NULL_STRING_MODE; | ||
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| Any_name_NS: ~[ \t\r\n]+; | ||
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| SPACE_NS: [ \t]+ -> skip; | ||
| RETURN_NS: [\r\n]+ -> popMode; | ||
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