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remove links to practicals
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yannickwurm authored Sep 24, 2024
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Expand Up @@ -53,15 +53,15 @@ Prerequisites for the practicals are:

## 2. Practicals

1. [Short read cleaning](./current-year/practicals/reference_genome/pt-1-read-cleaning.html): Illumina
1. Short read cleaning: Illumina
short read cleaning
2. [Reads to genome](./current-year/practicals/reference_genome/pt-2-assembly.html): genome assembly,
2. Reads to genome: genome assembly,
quality control
3. [Gene prediction](./current-year/practicals/reference_genome/pt-3-prediction.html): gene prediction,
3. Gene prediction: gene prediction,
quality control
* Population sequencing to genotypes to population genetics statistics:
4. [Mapping reads, calling variants, visualizing variant calls.](./current-year/practicals/population_genetics/pt-4-map-call.html)
5. [Analysing variants: PCA, measuring Differentiation & Diversity.](./current-year/practicals/population_genetics/pt-5-popgen.html)
4. Mapping reads, calling variants, visualizing variant calls.
5. Analysing variants: PCA, measuring Differentiation & Diversity.

## 3. Computers

Expand All @@ -76,20 +76,15 @@ practicals.

## 4. Authors/Credits

The initial version of this practical was put together by
The initial version of this practical was put together by:

* [Yannick Wurm](http://wurmlab.com) [@yannick__](http://twitter.com/yannick__)
* [Oksana Riba-Grognuz](https://www.linkedin.com/in/oksana80)' contributions
for the 2012 edition of this course
* [Oksana Riba-Grognuz](https://www.linkedin.com/in/oksana80)'.

It was heavily heavily heavily revised and improved thanks to efforts and new
content by
* [Rodrigo Pracana](https://wurmlab.github.io/team/rpracana/)
* Anurag Priyam, Carlos MartinezRuiz, Nazrath Nawz, many others in the lab.
[Robert Waterhouse](http://www.rmwaterhouse.org/),
[Bruno Vieira](http://wurmlab.github.io/team/bmpvieira)
content by [https://github.com/wurmlab/genomicscourse/graphs/contributors](others).

<!-- ## 5. Things used in other versions of this course:
* ~~[Inferring population sizes and gene flow.](./msmc/msmc-tutorial/guide) (Credit Stefan Schiffels [@stschiff](http://twitter.com/stschiff))~~
* ~~Gene expression ( Credit Julien Roux [www](http://www.unil.ch/dee/home/menuinst/people/post-docs--associates/dr-julien-roux.html) [@_julien_roux](http://twitter.com/_julien_roux)):~~
* ~~[From raw sequencing data to transcript expression levels.](./2016-SIB/practicals/rnaseq/TP1)~~
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