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@@ -1750,6 +1750,7 @@ WP5483 | |
| WP5485 | ||
| WP5489 | ||
| WP548 | ||
| WP5491 | ||
| WP54 | ||
| WP550 | ||
| WP552 | ||
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| { | ||
| "schemaVersion": 1, | ||
| "label": "curation", | ||
| "message": "2 issues", | ||
| "color": "red" | ||
| } |
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| <img style="float: right; width: 200px" src="https://upload.wikimedia.org/wikipedia/commons/thumb/8/83/Wplogo_with_text_500.png/640px-Wplogo_with_text_500.png" /> | ||
| # WikiPathways WP5491 | ||
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| * WikiPathways: [WP5491](https://wikipathways.org/pathways/WP5491) ([classic](https://classic.wikipathways.org/instance/WP5491)) | ||
| * Species: Homo sapiens | ||
| * Scholia: [WP5491](https://scholia.toolforge.org/wikipathways/WP5491) | ||
| ## Tests | ||
| * CASMetabolitesTests: all 2 tests OK! | ||
| * ChEBIMetabolitesTests: all 5 tests OK! | ||
| * ChemSpiderTests: all 2 tests OK! | ||
| * DataNodesTests | ||
| * dataNodesWithoutIdentifier: .x we found 1 problem(s): | ||
| * [The following DataNodes have no identifier: 5](#d2d32fa4) | ||
| * unknownTypes_knownDatasource: .. all OK! | ||
| * unknownTypes: .. all OK! | ||
| * unknownTypes_Reactome: .. all OK! | ||
| * otherDataSource: .. all OK! | ||
| * EnsemblTests | ||
| * wrongEnsemblIDForCowSpecies: .. all OK! | ||
| * wrongEnsemblIDForHumanSpecies: .x we found 1 problem(s): | ||
| * [Ensembl identifiers for wrong species for a human pathway: 1](#a84343b) | ||
| * wrongEnsemblIDForMouseSpecies: .. all OK! | ||
| * wrongEnsemblIDForRatSpecies: .. all OK! | ||
| * GeneTests: all 4 tests OK! | ||
| * GeneralTests: all 15 tests OK! | ||
| * HMDBSecMetabolitesTests: all 3 tests OK! | ||
| * InteractionTests: all 8 tests OK! | ||
| * KEGGMetaboliteTests: all 2 tests OK! | ||
| * LIPIDMAPSTests: all 1 tests OK! | ||
| * MetaboliteStructureTests: all 1 tests OK! | ||
| * MetabolitesTests: all 14 tests OK! | ||
| * OudatedDataSourcesTests: all 24 tests OK! | ||
| * PathwayTests: all 7 tests OK! | ||
| * ProteinsTests: all 2 tests OK! | ||
| * PubChemMetabolitesTests: all 3 tests OK! | ||
| * ReferencesTests: all 6 tests OK! | ||
| * UniProtTests: all 5 tests OK! | ||
| * WikidataTests: all 4 tests OK! | ||
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| ## Summary | ||
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| * Number of test classes: 20 | ||
| * Number of tests: 117 | ||
| * Number of assertions: 235 | ||
| * Number of fails: 2 | ||
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| ## Fails | ||
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| <a name="d2d32fa4" /> | ||
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| ## Data nodes without an identifier | ||
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| The following DataNodes have no identifier: 5 | ||
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| * [http://classic.wikipathways.org/instance/WP5491_r135606](http://classic.wikipathways.org/instance/WP5491_r135606) http://rdf.wikipathways.org/Pathway/WP5491_r135606/DataNode/dee0b (BCR signaling) | ||
| * [http://classic.wikipathways.org/instance/WP5491_r135606](http://classic.wikipathways.org/instance/WP5491_r135606) http://rdf.wikipathways.org/Pathway/WP5491_r135606/DataNode/c5857 (Germinal center | ||
| development) | ||
| * [http://classic.wikipathways.org/instance/WP5491_r135606](http://classic.wikipathways.org/instance/WP5491_r135606) http://rdf.wikipathways.org/Pathway/WP5491_r135606/DataNode/acc39 (NF-KB) | ||
| * [http://classic.wikipathways.org/instance/WP5491_r135606](http://classic.wikipathways.org/instance/WP5491_r135606) http://rdf.wikipathways.org/Pathway/WP5491_r135606/DataNode/a0a7e (PI3K/AKT) | ||
| * [http://classic.wikipathways.org/instance/WP5491_r135606](http://classic.wikipathways.org/instance/WP5491_r135606) http://rdf.wikipathways.org/Pathway/WP5491_r135606/DataNode/bdfa2 (PI3K/AKT) | ||
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| More details at [https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier](https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier) | ||
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| <a name="a84343b" /> | ||
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| ## EnsemblTests.wrongEnsemblIDForHumanSpecies | ||
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| Ensembl identifiers for wrong species for a human pathway: 1 | ||
| ``` | ||
| http://classic.wikipathways.org/instance/WP5491_r135606 -> TLR, ? | ||
| ``` | ||
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