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5 changes: 5 additions & 0 deletions pathways.txt
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Expand Up @@ -376,6 +376,11 @@ WP1995
WP1996
WP19
WP1
WP2001
WP2003
WP2004
WP2005
WP2006
WP2007
WP200
WP2011
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6 changes: 6 additions & 0 deletions reports/WP2001.json
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{
"schemaVersion": 1,
"label": "curation",
"message": "success",
"color": "brightgreen"
}
38 changes: 38 additions & 0 deletions reports/WP2001.md
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<img style="float: right; width: 200px" src="https://upload.wikimedia.org/wikipedia/commons/thumb/8/83/Wplogo_with_text_500.png/640px-Wplogo_with_text_500.png" />
# WikiPathways WP2001

* WikiPathways: [WP2001](https://wikipathways.org/pathways/WP2001) ([classic](https://classic.wikipathways.org/instance/WP2001))
* Species: Homo sapiens
* Scholia: [WP2001](https://scholia.toolforge.org/wikipathways/WP2001)
## Tests
* CASMetabolitesTests: all 2 tests OK!
* ChEBIMetabolitesTests: all 5 tests OK!
* ChemSpiderTests: all 2 tests OK!
* DataNodesTests: all 5 tests OK!
* EnsemblTests: all 4 tests OK!
* GeneTests: all 4 tests OK!
* GeneralTests: all 15 tests OK!
* HMDBSecMetabolitesTests: all 3 tests OK!
* InteractionTests: all 8 tests OK!
* KEGGMetaboliteTests: all 2 tests OK!
* LIPIDMAPSTests: all 1 tests OK!
* MetaboliteStructureTests: all 1 tests OK!
* MetabolitesTests: all 14 tests OK!
* OudatedDataSourcesTests: all 24 tests OK!
* PathwayTests: all 7 tests OK!
* ProteinsTests: all 2 tests OK!
* PubChemMetabolitesTests: all 3 tests OK!
* ReferencesTests: all 6 tests OK!
* UniProtTests: all 5 tests OK!
* WikidataTests: all 4 tests OK!


## Summary

* Number of test classes: 20
* Number of tests: 117
* Number of assertions: 235
* Number of fails: 0

## Fails

1 change: 1 addition & 0 deletions reports/WP2001.txt
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@@ -0,0 +1 @@
status=✓
6 changes: 6 additions & 0 deletions reports/WP2003.json
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{
"schemaVersion": 1,
"label": "curation",
"message": "success",
"color": "brightgreen"
}
38 changes: 38 additions & 0 deletions reports/WP2003.md
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@@ -0,0 +1,38 @@
<img style="float: right; width: 200px" src="https://upload.wikimedia.org/wikipedia/commons/thumb/8/83/Wplogo_with_text_500.png/640px-Wplogo_with_text_500.png" />
# WikiPathways WP2003

* WikiPathways: [WP2003](https://wikipathways.org/pathways/WP2003) ([classic](https://classic.wikipathways.org/instance/WP2003))
* Species: Homo sapiens
* Scholia: [WP2003](https://scholia.toolforge.org/wikipathways/WP2003)
## Tests
* CASMetabolitesTests: all 2 tests OK!
* ChEBIMetabolitesTests: all 5 tests OK!
* ChemSpiderTests: all 2 tests OK!
* DataNodesTests: all 5 tests OK!
* EnsemblTests: all 4 tests OK!
* GeneTests: all 4 tests OK!
* GeneralTests: all 15 tests OK!
* HMDBSecMetabolitesTests: all 3 tests OK!
* InteractionTests: all 8 tests OK!
* KEGGMetaboliteTests: all 2 tests OK!
* LIPIDMAPSTests: all 1 tests OK!
* MetaboliteStructureTests: all 1 tests OK!
* MetabolitesTests: all 14 tests OK!
* OudatedDataSourcesTests: all 24 tests OK!
* PathwayTests: all 7 tests OK!
* ProteinsTests: all 2 tests OK!
* PubChemMetabolitesTests: all 3 tests OK!
* ReferencesTests: all 6 tests OK!
* UniProtTests: all 5 tests OK!
* WikidataTests: all 4 tests OK!


## Summary

* Number of test classes: 20
* Number of tests: 117
* Number of assertions: 235
* Number of fails: 0

## Fails

1 change: 1 addition & 0 deletions reports/WP2003.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
status=✓
6 changes: 6 additions & 0 deletions reports/WP2004.json
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@@ -0,0 +1,6 @@
{
"schemaVersion": 1,
"label": "curation",
"message": "success",
"color": "brightgreen"
}
38 changes: 38 additions & 0 deletions reports/WP2004.md
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@@ -0,0 +1,38 @@
<img style="float: right; width: 200px" src="https://upload.wikimedia.org/wikipedia/commons/thumb/8/83/Wplogo_with_text_500.png/640px-Wplogo_with_text_500.png" />
# WikiPathways WP2004

* WikiPathways: [WP2004](https://wikipathways.org/pathways/WP2004) ([classic](https://classic.wikipathways.org/instance/WP2004))
* Species: Homo sapiens
* Scholia: [WP2004](https://scholia.toolforge.org/wikipathways/WP2004)
## Tests
* CASMetabolitesTests: all 2 tests OK!
* ChEBIMetabolitesTests: all 5 tests OK!
* ChemSpiderTests: all 2 tests OK!
* DataNodesTests: all 5 tests OK!
* EnsemblTests: all 4 tests OK!
* GeneTests: all 4 tests OK!
* GeneralTests: all 15 tests OK!
* HMDBSecMetabolitesTests: all 3 tests OK!
* InteractionTests: all 8 tests OK!
* KEGGMetaboliteTests: all 2 tests OK!
* LIPIDMAPSTests: all 1 tests OK!
* MetaboliteStructureTests: all 1 tests OK!
* MetabolitesTests: all 14 tests OK!
* OudatedDataSourcesTests: all 24 tests OK!
* PathwayTests: all 7 tests OK!
* ProteinsTests: all 2 tests OK!
* PubChemMetabolitesTests: all 3 tests OK!
* ReferencesTests: all 6 tests OK!
* UniProtTests: all 5 tests OK!
* WikidataTests: all 4 tests OK!


## Summary

* Number of test classes: 20
* Number of tests: 117
* Number of assertions: 235
* Number of fails: 0

## Fails

1 change: 1 addition & 0 deletions reports/WP2004.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
status=✓
6 changes: 6 additions & 0 deletions reports/WP2005.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,6 @@
{
"schemaVersion": 1,
"label": "curation",
"message": "success",
"color": "brightgreen"
}
38 changes: 38 additions & 0 deletions reports/WP2005.md
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@@ -0,0 +1,38 @@
<img style="float: right; width: 200px" src="https://upload.wikimedia.org/wikipedia/commons/thumb/8/83/Wplogo_with_text_500.png/640px-Wplogo_with_text_500.png" />
# WikiPathways WP2005

* WikiPathways: [WP2005](https://wikipathways.org/pathways/WP2005) ([classic](https://classic.wikipathways.org/instance/WP2005))
* Species: Homo sapiens
* Scholia: [WP2005](https://scholia.toolforge.org/wikipathways/WP2005)
## Tests
* CASMetabolitesTests: all 2 tests OK!
* ChEBIMetabolitesTests: all 5 tests OK!
* ChemSpiderTests: all 2 tests OK!
* DataNodesTests: all 5 tests OK!
* EnsemblTests: all 4 tests OK!
* GeneTests: all 4 tests OK!
* GeneralTests: all 15 tests OK!
* HMDBSecMetabolitesTests: all 3 tests OK!
* InteractionTests: all 8 tests OK!
* KEGGMetaboliteTests: all 2 tests OK!
* LIPIDMAPSTests: all 1 tests OK!
* MetaboliteStructureTests: all 1 tests OK!
* MetabolitesTests: all 14 tests OK!
* OudatedDataSourcesTests: all 24 tests OK!
* PathwayTests: all 7 tests OK!
* ProteinsTests: all 2 tests OK!
* PubChemMetabolitesTests: all 3 tests OK!
* ReferencesTests: all 6 tests OK!
* UniProtTests: all 5 tests OK!
* WikidataTests: all 4 tests OK!


## Summary

* Number of test classes: 20
* Number of tests: 117
* Number of assertions: 235
* Number of fails: 0

## Fails

1 change: 1 addition & 0 deletions reports/WP2005.txt
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@@ -0,0 +1 @@
status=✓
6 changes: 6 additions & 0 deletions reports/WP2006.json
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@@ -0,0 +1,6 @@
{
"schemaVersion": 1,
"label": "curation",
"message": "success",
"color": "brightgreen"
}
38 changes: 38 additions & 0 deletions reports/WP2006.md
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@@ -0,0 +1,38 @@
<img style="float: right; width: 200px" src="https://upload.wikimedia.org/wikipedia/commons/thumb/8/83/Wplogo_with_text_500.png/640px-Wplogo_with_text_500.png" />
# WikiPathways WP2006

* WikiPathways: [WP2006](https://wikipathways.org/pathways/WP2006) ([classic](https://classic.wikipathways.org/instance/WP2006))
* Species: Homo sapiens
* Scholia: [WP2006](https://scholia.toolforge.org/wikipathways/WP2006)
## Tests
* CASMetabolitesTests: all 2 tests OK!
* ChEBIMetabolitesTests: all 5 tests OK!
* ChemSpiderTests: all 2 tests OK!
* DataNodesTests: all 5 tests OK!
* EnsemblTests: all 4 tests OK!
* GeneTests: all 4 tests OK!
* GeneralTests: all 15 tests OK!
* HMDBSecMetabolitesTests: all 3 tests OK!
* InteractionTests: all 8 tests OK!
* KEGGMetaboliteTests: all 2 tests OK!
* LIPIDMAPSTests: all 1 tests OK!
* MetaboliteStructureTests: all 1 tests OK!
* MetabolitesTests: all 14 tests OK!
* OudatedDataSourcesTests: all 24 tests OK!
* PathwayTests: all 7 tests OK!
* ProteinsTests: all 2 tests OK!
* PubChemMetabolitesTests: all 3 tests OK!
* ReferencesTests: all 6 tests OK!
* UniProtTests: all 5 tests OK!
* WikidataTests: all 4 tests OK!


## Summary

* Number of test classes: 20
* Number of tests: 117
* Number of assertions: 235
* Number of fails: 0

## Fails

1 change: 1 addition & 0 deletions reports/WP2006.txt
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@@ -0,0 +1 @@
status=✓
2 changes: 1 addition & 1 deletion reports/WP3893.md
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Expand Up @@ -48,7 +48,7 @@

The following DataNodes have no identifier: 1

* [http://classic.wikipathways.org/instance/WP3893_r129544](http://classic.wikipathways.org/instance/WP3893_r129544) http://rdf.wikipathways.org/Pathway/WP3893_r129544/DataNode/ab627 (ROR-gammat)
* [http://classic.wikipathways.org/instance/WP3893_r135705](http://classic.wikipathways.org/instance/WP3893_r135705) http://rdf.wikipathways.org/Pathway/WP3893_r135705/DataNode/ab627 (ROR-gammat)


More details at [https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier](https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier)
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26 changes: 13 additions & 13 deletions reports/WP4658.md
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Expand Up @@ -58,9 +58,9 @@

The following DataNodes have no identifier: 2

* [http://classic.wikipathways.org/instance/WP4658_r127394](http://classic.wikipathways.org/instance/WP4658_r127394) http://rdf.wikipathways.org/Pathway/WP4658_r127394/DataNode/c5ccc (Cell cycle)
* [http://classic.wikipathways.org/instance/WP4658_r127394](http://classic.wikipathways.org/instance/WP4658_r127394) http://rdf.wikipathways.org/Pathway/WP4658_r127394/DataNode/e0ac3 (p53 Signaling
Pathway)
* [http://classic.wikipathways.org/instance/WP4658_r135693](http://classic.wikipathways.org/instance/WP4658_r135693) http://rdf.wikipathways.org/Pathway/WP4658_r135693/DataNode/c5ccc (Cell cycle)
* [http://classic.wikipathways.org/instance/WP4658_r135693](http://classic.wikipathways.org/instance/WP4658_r135693) http://rdf.wikipathways.org/Pathway/WP4658_r135693/DataNode/e0ac3 (p53 signaling
pathway)


More details at [https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier](https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier)
Expand All @@ -71,18 +71,18 @@ More details at [https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests

Interactions found that involve Labels: 8
```
http://classic.wikipathways.org/instance/WP4658_r127394 "DNA damage" with graphId e33c0
http://classic.wikipathways.org/instance/WP4658_r127394 "Proliferation" with graphId a2807
http://classic.wikipathways.org/instance/WP4658_r127394 "Resistance to
apoptotic signals" with graphId ae424
http://classic.wikipathways.org/instance/WP4658_r127394 "Interrupted control of cell growth,
http://classic.wikipathways.org/instance/WP4658_r135693 "Interrupted control of cell growth,
leading to tumor progression" with graphId cecbc
http://classic.wikipathways.org/instance/WP4658_r127394 "Angiogenesis" with graphId b3d50
http://classic.wikipathways.org/instance/WP4658_r127394 "uncontrolled proliferation
http://classic.wikipathways.org/instance/WP4658_r135693 "DNA damage" with graphId e33c0
http://classic.wikipathways.org/instance/WP4658_r135693 "G1/S progression" with graphId d0d5a
http://classic.wikipathways.org/instance/WP4658_r135693 "Inhibition of apoptosis" with graphId e07a7
http://classic.wikipathways.org/instance/WP4658_r135693 "Proliferation" with graphId a2807
http://classic.wikipathways.org/instance/WP4658_r135693 "Resistance to
apoptotic signals" with graphId ae424
http://classic.wikipathways.org/instance/WP4658_r135693 "Uncontrolled proliferation
Increased survival
Genomic instability" with graphId ac8c8
http://classic.wikipathways.org/instance/WP4658_r127394 "Inhibition of apoptosis" with graphId e07a7
http://classic.wikipathways.org/instance/WP4658_r127394 "G1/S progression" with graphId d0d5a
http://classic.wikipathways.org/instance/WP4658_r135693 "Angiogenesis" with graphId b3d50
```

<a name="1c118206" />
Expand All @@ -91,7 +91,7 @@ http://classic.wikipathways.org/instance/WP4658_r127394 "G1/S progression" with

Interactions between identical nodes: 1
```
http://classic.wikipathways.org/instance/WP4658_r127394 http://rdf.wikipathways.org/Pathway/WP4658_r127394/WP/Interaction/id1a8fc154 "CYCS" (https://identifiers.org/ensembl/ENSG00000172115) and
http://classic.wikipathways.org/instance/WP4658_r135693 http://rdf.wikipathways.org/Pathway/WP4658_r135693/WP/Interaction/id1a8fc154 "CYCS" (https://identifiers.org/ensembl/ENSG00000172115) and
CYCS" (https://identifiers.org/ensembl/ENSG00000172115)
```

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42 changes: 21 additions & 21 deletions reports/WP5046.md
Original file line number Diff line number Diff line change
Expand Up @@ -59,11 +59,11 @@

The following DataNodes have no identifier: 5

* [http://classic.wikipathways.org/instance/WP5046_r118987](http://classic.wikipathways.org/instance/WP5046_r118987) http://rdf.wikipathways.org/Pathway/WP5046_r118987/DataNode/b1016 (ADP/ATP)
* [http://classic.wikipathways.org/instance/WP5046_r118987](http://classic.wikipathways.org/instance/WP5046_r118987) http://rdf.wikipathways.org/Pathway/WP5046_r118987/DataNode/db94a (NAD/NADH)
* [http://classic.wikipathways.org/instance/WP5046_r118987](http://classic.wikipathways.org/instance/WP5046_r118987) http://rdf.wikipathways.org/Pathway/WP5046_r118987/DataNode/c11ca (SA-B-Gal)
* [http://classic.wikipathways.org/instance/WP5046_r118987](http://classic.wikipathways.org/instance/WP5046_r118987) http://rdf.wikipathways.org/Pathway/WP5046_r118987/DataNode/ecc9d (p16)
* [http://classic.wikipathways.org/instance/WP5046_r118987](http://classic.wikipathways.org/instance/WP5046_r118987) http://rdf.wikipathways.org/Pathway/WP5046_r118987/DataNode/c4573 (p21)
* [http://classic.wikipathways.org/instance/WP5046_r135695](http://classic.wikipathways.org/instance/WP5046_r135695) http://rdf.wikipathways.org/Pathway/WP5046_r135695/DataNode/b1016 (ADP/ATP)
* [http://classic.wikipathways.org/instance/WP5046_r135695](http://classic.wikipathways.org/instance/WP5046_r135695) http://rdf.wikipathways.org/Pathway/WP5046_r135695/DataNode/db94a (NAD/NADH)
* [http://classic.wikipathways.org/instance/WP5046_r135695](http://classic.wikipathways.org/instance/WP5046_r135695) http://rdf.wikipathways.org/Pathway/WP5046_r135695/DataNode/c11ca (SA-B-Gal)
* [http://classic.wikipathways.org/instance/WP5046_r135695](http://classic.wikipathways.org/instance/WP5046_r135695) http://rdf.wikipathways.org/Pathway/WP5046_r135695/DataNode/ecc9d (p16)
* [http://classic.wikipathways.org/instance/WP5046_r135695](http://classic.wikipathways.org/instance/WP5046_r135695) http://rdf.wikipathways.org/Pathway/WP5046_r135695/DataNode/c4573 (p21)


More details at [https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier](https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier)
Expand All @@ -74,11 +74,11 @@ More details at [https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests

The following DataNodes have Unknown @Type: 5

* [http://classic.wikipathways.org/instance/WP5046_r118987](http://classic.wikipathways.org/instance/WP5046_r118987) http://rdf.wikipathways.org/Pathway/WP5046_r118987/DataNode/b1016 (ADP/ATP)
* [http://classic.wikipathways.org/instance/WP5046_r118987](http://classic.wikipathways.org/instance/WP5046_r118987) http://rdf.wikipathways.org/Pathway/WP5046_r118987/DataNode/db94a (NAD/NADH)
* [http://classic.wikipathways.org/instance/WP5046_r118987](http://classic.wikipathways.org/instance/WP5046_r118987) http://rdf.wikipathways.org/Pathway/WP5046_r118987/DataNode/c11ca (SA-B-Gal)
* [http://classic.wikipathways.org/instance/WP5046_r118987](http://classic.wikipathways.org/instance/WP5046_r118987) http://rdf.wikipathways.org/Pathway/WP5046_r118987/DataNode/ecc9d (p16)
* [http://classic.wikipathways.org/instance/WP5046_r118987](http://classic.wikipathways.org/instance/WP5046_r118987) http://rdf.wikipathways.org/Pathway/WP5046_r118987/DataNode/c4573 (p21)
* [http://classic.wikipathways.org/instance/WP5046_r135695](http://classic.wikipathways.org/instance/WP5046_r135695) http://rdf.wikipathways.org/Pathway/WP5046_r135695/DataNode/b1016 (ADP/ATP)
* [http://classic.wikipathways.org/instance/WP5046_r135695](http://classic.wikipathways.org/instance/WP5046_r135695) http://rdf.wikipathways.org/Pathway/WP5046_r135695/DataNode/db94a (NAD/NADH)
* [http://classic.wikipathways.org/instance/WP5046_r135695](http://classic.wikipathways.org/instance/WP5046_r135695) http://rdf.wikipathways.org/Pathway/WP5046_r135695/DataNode/c11ca (SA-B-Gal)
* [http://classic.wikipathways.org/instance/WP5046_r135695](http://classic.wikipathways.org/instance/WP5046_r135695) http://rdf.wikipathways.org/Pathway/WP5046_r135695/DataNode/ecc9d (p16)
* [http://classic.wikipathways.org/instance/WP5046_r135695](http://classic.wikipathways.org/instance/WP5046_r135695) http://rdf.wikipathways.org/Pathway/WP5046_r135695/DataNode/c4573 (p21)


More details at [https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes](https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes)
Expand All @@ -89,15 +89,15 @@ More details at [https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests

Interactions found that involve Labels: 6
```
http://classic.wikipathways.org/instance/WP5046_r118987 "High proinflammatory SASP" with graphId b3b2f
http://classic.wikipathways.org/instance/WP5046_r118987 "Cell Senescence" with graphId d4683
http://classic.wikipathways.org/instance/WP5046_r118987 "Growth Arrest" with graphId c63ba
http://classic.wikipathways.org/instance/WP5046_r118987 "Mitochondrial Dysfunction-
Associated Senescence" with graphId ea4cd
http://classic.wikipathways.org/instance/WP5046_r118987 "Pentose Phospate
Pathway" with graphId c8486
http://classic.wikipathways.org/instance/WP5046_r118987 "Promotion of
Cancer Progression" with graphId ed395
http://classic.wikipathways.org/instance/WP5046_r135695 "Cell senescence" with graphId d4683
http://classic.wikipathways.org/instance/WP5046_r135695 "High proinflammatory SASP" with graphId b3b2f
http://classic.wikipathways.org/instance/WP5046_r135695 "Mitochondrial dysfunction-
associated senescence" with graphId ea4cd
http://classic.wikipathways.org/instance/WP5046_r135695 "Promotion of
cancer progression" with graphId ed395
http://classic.wikipathways.org/instance/WP5046_r135695 "Pentose phospate
pathway" with graphId c8486
http://classic.wikipathways.org/instance/WP5046_r135695 "Growth arrest" with graphId c63ba
```

<a name="1c118207" />
Expand All @@ -106,9 +106,9 @@ Cancer Progression" with graphId ed395

Interactions between identical nodes: 2
```
http://classic.wikipathways.org/instance/WP5046_r118987 http://rdf.wikipathways.org/Pathway/WP5046_r118987/WP/Interaction/id8a29eb96 "Malate" (https://identifiers.org/chebi/CHEBI:30797) and
http://classic.wikipathways.org/instance/WP5046_r135695 http://rdf.wikipathways.org/Pathway/WP5046_r135695/WP/Interaction/id8a29eb96 "Malate" (https://identifiers.org/chebi/CHEBI:30797) and
Malate" (https://identifiers.org/chebi/CHEBI:30797)
http://classic.wikipathways.org/instance/WP5046_r118987 http://rdf.wikipathways.org/Pathway/WP5046_r118987/WP/Interaction/idc80a552b "Aspartate" (https://identifiers.org/chebi/CHEBI:35391) and
http://classic.wikipathways.org/instance/WP5046_r135695 http://rdf.wikipathways.org/Pathway/WP5046_r135695/WP/Interaction/idc80a552b "Aspartate" (https://identifiers.org/chebi/CHEBI:35391) and
Aspartate" (https://identifiers.org/chebi/CHEBI:35391)
```

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