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| <img style="float: right; width: 200px" src="logo.png" /> | ||
| # Validation Reports | ||
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| * [reports/WP4.md](reports/WP4.md) ⨯ | ||
| * [reports/WP4156.md](reports/WP4156.md) <img alt="pathway status" src="https://img.shields.io/endpoint?url=https://wikipathways.org/SARS-CoV-2-WikiPathways/reports/WP4156.json"> | ||
| * [reports/WP5173.md](reports/WP5173.md) <img alt="pathway status" src="https://img.shields.io/endpoint?url=https://wikipathways.org/SARS-CoV-2-WikiPathways/reports/WP5173.json"> | ||
| * [reports/WP5176.md](reports/WP5176.md) <img alt="pathway status" src="https://img.shields.io/endpoint?url=https://wikipathways.org/SARS-CoV-2-WikiPathways/reports/WP5176.json"> | ||
| * [reports/WP5178.md](reports/WP5178.md) <img alt="pathway status" src="https://img.shields.io/endpoint?url=https://wikipathways.org/SARS-CoV-2-WikiPathways/reports/WP5178.json"> |
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| { | ||
| "schemaVersion": 1, | ||
| "label": "curation", | ||
| "message": "3 errors", | ||
| "color": "red" | ||
| } |
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| status=⨯ |
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| { | ||
| "schemaVersion": 1, | ||
| "label": "curation", | ||
| "message": "5 errors", | ||
| "color": "red" | ||
| } |
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| <img style="float: right; width: 200px" src="../logo.png" /> | ||
| # WikiPathways WP5173 | ||
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| * WikiPathways: [WP5173](https://identifiers.org/wikipathways:WP5173) | ||
| * Scholia: [WP5173](https://scholia.toolforge.org/wikipathways/WP5173) | ||
| * WPRDF file: [wp/Human/WP5173.ttl](../wp/Human/WP5173.ttl) | ||
| * GPMLRDF file: [wp/gpml/Human/WP5173.ttl](../wp/gpml/Human/WP5173.ttl) | ||
| * SBML file: [sbml/WP5173.sbml](../sbml/WP5173.sbml) ([SVG](../sbml/WP5173.svg)) ([conversion notes](../sbml/WP5173.txt)) | ||
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| ## Tests | ||
| * CASMetabolitesTests: all 2 tests OK! | ||
| * ChEBIMetabolitesTests: all 4 tests OK! | ||
| * ChemSpiderTests: all 2 tests OK! | ||
| * CovidDiseaseMapsTests | ||
| * interactionsWithoutReferences: .x we found 1 problem(s): | ||
| * [Interactions without literature references: 12](#9701cce3) | ||
| * missingHGNC: .. all OK! | ||
| * DataNodesTests: all 5 tests OK! | ||
| * EnsemblTests: all 5 tests OK! | ||
| * GeneTests: all 4 tests OK! | ||
| * GeneralTests: all 13 tests OK! | ||
| * HMDBMetabolitesTests: all 2 tests OK! | ||
| * HMDBSecMetabolitesTests: all 3 tests OK! | ||
| * InteractionTests | ||
| * noMetaboliteToNonMetaboliteConversions: .. all OK! | ||
| * noNonMetaboliteToMetaboliteConversions: .. all OK! | ||
| * noGeneProteinConversions: .. all OK! | ||
| * nonNumericIDs: .. all OK! | ||
| * interactionsWithLabels: .x we found 1 problem(s): | ||
| * [Interactions found that involve Labels: 13](#fe97a8bb) | ||
| * possibleTranslocations: .x we found 1 problem(s): | ||
| * [Interactions between identical nodes: 2](#1c118207) | ||
| * noProteinProteinConversions: .. all OK! | ||
| * incorrectKEGGIdentifiers: .. all OK! | ||
| * KEGGMetaboliteTests: all 2 tests OK! | ||
| * LIPIDMAPSTests | ||
| * retiredIdentifiers: .. all OK! | ||
| * onlyLIPIDMAPS: .x we found 1 problem(s): | ||
| * [Expected a LIPID MAPS identifier, but found other identifiers: 10](#d0bfb678) | ||
| * MetaboliteStructureTests | ||
| * atLeastFifteenMetabolites: .x we found 1 problem(s): | ||
| * Expected true but found false | ||
| * isPartOfAPathway: .. all OK! | ||
| * MetabolitesTests: all 15 tests OK! | ||
| * OudatedDataSourcesTests: all 7 tests OK! | ||
| * PathwayTests: all 7 tests OK! | ||
| * ProteinsTests: all 2 tests OK! | ||
| * PubChemMetabolitesTests: all 3 tests OK! | ||
| * ReferencesTests: all 6 tests OK! | ||
| * UniProtTests: all 5 tests OK! | ||
| * WikidataTests: all 15 tests OK! | ||
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| ## Summary | ||
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| * Number of test classes: 22 | ||
| * Number of tests: 116 | ||
| * Number of assertions: 234 | ||
| * Number of fails: 5 | ||
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| ## Fails | ||
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| <a name="9701cce3" /> | ||
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| ## CovidDiseaseMapsTests.interactionsWithoutReferences | ||
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| Interactions without literature references: 12 | ||
| ``` | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 -> http://rdf.wikipathways.org/Pathway/WP5173_r134383/WP/Interaction/d5868 | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 -> http://rdf.wikipathways.org/Pathway/WP5173_r134383/WP/Interaction/ac8fc | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 -> http://rdf.wikipathways.org/Pathway/WP5173_r134383/WP/Interaction/e0131 | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 -> http://rdf.wikipathways.org/Pathway/WP5173_r134383/WP/Interaction/a84b2_1 | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 -> http://rdf.wikipathways.org/Pathway/WP5173_r134383/WP/Interaction/e5a6a | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 -> http://rdf.wikipathways.org/Pathway/WP5173_r134383/WP/Interaction/a4ae6 | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 -> http://rdf.wikipathways.org/Pathway/WP5173_r134383/WP/Interaction/a84b2_2 | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 -> http://rdf.wikipathways.org/Pathway/WP5173_r134383/WP/Interaction/fe651 | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 -> http://rdf.wikipathways.org/Pathway/WP5173_r134383/WP/Interaction/f16aa | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 -> http://rdf.wikipathways.org/Pathway/WP5173_r134383/WP/Interaction/f0f1e | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 -> http://rdf.wikipathways.org/Pathway/WP5173_r134383/WP/Interaction/f075d | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 -> http://rdf.wikipathways.org/Pathway/WP5173_r134383/WP/Interaction/c030e | ||
| ``` | ||
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| More details at [https://wikipathways.github.io/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences](https://wikipathways.github.io/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences) | ||
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| <a name="fe97a8bb" /> | ||
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| ## InteractionTests.interactionsWithLabels | ||
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| Interactions found that involve Labels: 13 | ||
| ``` | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 "Polyglucosan body myopathy 2" with graphId b5440 | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 "Congenital disorder of glycosylation, | ||
| type It" with graphId de139 | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 "Glycogen storage disease 0, muscle" with graphId fbaa3 | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 "Glycogen storage | ||
| disease VI" with graphId ae5e6 | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 "Galactokinase deficiency" with graphId d2625 | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 "Glycogen storage disease XV" with graphId abc2c | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 "Polyglucosan body neuropathy" with graphId eba21 | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 "Uridine diphosphate | ||
| galactose-4-epimerase | ||
| deficiency" with graphId c9ff6 | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 "Glycogen storage disease 0, liver" with graphId f124e | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 "Galactosaemia" with graphId a8706 | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 "Glycogen storage | ||
| disease IV" with graphId aaa50 | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 "Fanconi-Bickel syndrome" with graphId fd3d0 | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 "Intestinal glucose-galactose | ||
| malabsorption" with graphId d61c1 | ||
| ``` | ||
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| <a name="1c118207" /> | ||
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| ## InteractionTests.possibleTranslocations | ||
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| Interactions between identical nodes: 2 | ||
| ``` | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 http://rdf.wikipathways.org/Pathway/WP5173_r134383/WP/Interaction/a4ae6 "Galactose" (https://identifiers.org/chebi/CHEBI:28260) and | ||
| Galactose" (https://identifiers.org/chebi/CHEBI:28260) | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 http://rdf.wikipathways.org/Pathway/WP5173_r134383/WP/Interaction/f075d "Galactose" (https://identifiers.org/chebi/CHEBI:28260) and | ||
| Galactose" (https://identifiers.org/chebi/CHEBI:28260) | ||
| ``` | ||
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| More details at [https://wikipathways.github.io/WikiPathwaysCurator/InteractionTests/possibleTranslocations](https://wikipathways.github.io/WikiPathwaysCurator/InteractionTests/possibleTranslocations) | ||
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| <a name="d0bfb678" /> | ||
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| ## LIPIDMAPSTests.onlyLIPIDMAPS | ||
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| Expected a LIPID MAPS identifier, but found other identifiers: 10 | ||
| ``` | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 Glycogen (n+1) has 9005-79-2 from CAS but expected a LIPID MAPS identifier | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 D-galactonate has CHEBI:12931 from ChEBI but expected a LIPID MAPS identifier | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 Glucose-1-phosphate has CHEBI:16077 from ChEBI but expected a LIPID MAPS identifier | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 Galactose-1-phosphate has CHEBI:17973 from ChEBI but expected a LIPID MAPS identifier | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 UDP-glucose has CHEBI:18066 from ChEBI but expected a LIPID MAPS identifier | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 Glycogen has CHEBI:28087 from ChEBI but expected a LIPID MAPS identifier | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 Galactose has CHEBI:28260 from ChEBI but expected a LIPID MAPS identifier | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 UDP-galactose has CHEBI:67119 from ChEBI but expected a LIPID MAPS identifier | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 Galactitol has HMDB0000107 from HMDB but expected a LIPID MAPS identifier | ||
| http://classic.wikipathways.org/instance/WP5173_r134383 Glucose-6-phosphate has HMDB0001401 from HMDB but expected a LIPID MAPS identifier | ||
| ``` | ||
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| More details at [https://wikipathways.github.io/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS](https://wikipathways.github.io/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS) | ||
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| <a name="3b0f9366" /> | ||
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| ## MetaboliteStructureTests.atLeastFifteenMetabolites | ||
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| Unexpectedly low metabolite count: 10 | ||
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| ``` | ||
| [["mb"], | ||
| ["https://identifiers.org/chebi/CHEBI:17973"], | ||
| ["https://identifiers.org/cas/9005-79-2"], | ||
| ["https://identifiers.org/chebi/CHEBI:28087"], | ||
| ["https://identifiers.org/hmdb/HMDB0000107"], | ||
| ["https://identifiers.org/chebi/CHEBI:18066"], | ||
| ["https://identifiers.org/chebi/CHEBI:28260"], | ||
| ["https://identifiers.org/chebi/CHEBI:67119"], | ||
| ["https://identifiers.org/chebi/CHEBI:12931"], | ||
| ["https://identifiers.org/chebi/CHEBI:16077"], | ||
| ["https://identifiers.org/hmdb/HMDB0001401"] | ||
| ] | ||
| ``` | ||
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| { | ||
| "schemaVersion": 1, | ||
| "label": "curation", | ||
| "message": "7 errors", | ||
| "color": "red" | ||
| } |
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