New SBML and SVG

wikipathways · Dec 28, 2024 · 1b7534b · 1b7534b
1 parent 33f075d
commit 1b7534b
Show file tree

Hide file tree

Showing 88 changed files with 156,931 additions and 150,880 deletions.
diff --git a/sbml/WP111.sbml b/sbml/WP111.sbml
diff --git a/sbml/WP111.svg b/sbml/WP111.svg
diff --git a/sbml/WP111.txt b/sbml/WP111.txt
@@ -8,22 +8,20 @@ Source: Wikipedia ([[wikipedia:Electron_transport_chain]])
 Proteins on this pathway have targeted assays available via the [https://assays.cancer.gov/available_assays?wp_id=WP111 CPTAC Assay Portal]
 
 [ARROW:a0b32]	Curved connections are not supported.
+[CATALYSIS:a4aef]	Interaction is not connected
+[CATALYSIS:ad726]	Interaction is not connected
 [ARROW:b0e4a]	Curved connections are not supported.
 [ARROW:b17ae]	Curved connections are not supported.
-[-:-]	Unknown gpml interaction type: mim-translocation
-[-:-]	Unknown gpml interaction type: mim-translocation
 [ARROW:b92fd]	Curved connections are not supported.
-[-:-]	Unknown gpml interaction type: mim-translocation
 [ARROW:c4d38]	Curved connections are not supported.
 [ARROW:cdee2]	Curved connections are not supported.
-[-:-]	Unknown gpml interaction type: mim-translocation
+[CATALYSIS:cfb2a]	Interaction is not connected
 [ARROW:da1d5]	Curved connections are not supported.
 [ARROW:dbdc8]	Curved connections are not supported.
 [ARROW:e0a8b]	Curved connections are not supported.
-[-:-]	Unknown gpml interaction type: mim-translocation
 [ARROW:f713d]	Curved connections are not supported.
 [ARROW:fa8bc]	Curved connections are not supported.
-[-:-]	Unknown gpml interaction type: mim-translocation
+[CATALYSIS:feb3f]	Interaction is not connected
 [ARROW:id86f308da]	Curved connections are not supported.
 [LINE:iddb4b9fa]	Curved connections are not supported.
 [LINE:iddb4b9fa]	Interaction is not connected

diff --git a/sbml/WP143.sbml b/sbml/WP143.sbml
diff --git a/sbml/WP143.svg b/sbml/WP143.svg
diff --git a/sbml/WP176.sbml b/sbml/WP176.sbml
diff --git a/sbml/WP176.svg b/sbml/WP176.svg
diff --git a/sbml/WP1982.sbml b/sbml/WP1982.sbml
diff --git a/sbml/WP1982.svg b/sbml/WP1982.svg
diff --git a/sbml/WP1982.txt b/sbml/WP1982.txt
@@ -69,14 +69,14 @@ Proteins on this pathway have targeted assays available via the [https://assays.
 [HeterodimerAssociationReaction:id1a728c5d]	Reaction should contain at least 2 reactants. GraphId: id1a728c5d
 [HeterodimerAssociationReaction:id1e5c48e8]	Reaction should contain at least 2 reactants. GraphId: id1e5c48e8
 [UnknownTransitionReaction:id7a0d8e51]	Self loops are not supported. Removing
-[UnknownTransitionReaction:a64eb]	Self loops are not supported. Removing
-[UnknownTransitionReaction:idb64035fa]	Self loops are not supported. Removing
-[UnknownTransitionReaction:id432c05c1]	Self loops are not supported. Removing
-[UnknownTransitionReaction:eaace]	Self loops are not supported. Removing
 [UnknownTransitionReaction:iddd5f4a25]	Self loops are not supported. Removing
-[UnknownTransitionReaction:id59369fb2]	Self loops are not supported. Removing
-[UnknownTransitionReaction:idfcf18012]	Self loops are not supported. Removing
 [UnknownTransitionReaction:id92c94eaf]	Self loops are not supported. Removing
+[UnknownTransitionReaction:idfcf18012]	Self loops are not supported. Removing
 [UnknownTransitionReaction:b84e5]	Self loops are not supported. Removing
 [UnknownTransitionReaction:id38324c84]	Self loops are not supported. Removing
+[UnknownTransitionReaction:idb64035fa]	Self loops are not supported. Removing
+[UnknownTransitionReaction:a64eb]	Self loops are not supported. Removing
+[UnknownTransitionReaction:id59369fb2]	Self loops are not supported. Removing
+[UnknownTransitionReaction:eaace]	Self loops are not supported. Removing
+[UnknownTransitionReaction:id432c05c1]	Self loops are not supported. Removing
 [UnknownTransitionReaction:e33e9]	Self loops are not supported. Removing
diff --git a/sbml/WP2884.sbml b/sbml/WP2884.sbml
diff --git a/sbml/WP2884.svg b/sbml/WP2884.svg
diff --git a/sbml/WP3925.sbml b/sbml/WP3925.sbml
diff --git a/sbml/WP3925.svg b/sbml/WP3925.svg
diff --git a/sbml/WP3925.txt b/sbml/WP3925.txt
@@ -27,20 +27,14 @@ This pathway was inferred from Mus musculus pathway "Amino Acid metabolism", WP6
 [LINE:c39a2]	Invalid interaction type as an input to reaction.
 [ARROW:db6e2]	Invalid interaction type "ARROW" as an output from reaction.
 [Label:be974]	 Label cannot be part of reaction. Tranforming to Unknown
-[Label:e0398]	 Label cannot be part of reaction. Tranforming to Unknown
 [Label:fefbd]	 Label cannot be part of reaction. Tranforming to Unknown
+[Label:b80f4]	 Label cannot be part of reaction. Tranforming to Unknown
 [Label:c28ae]	 Label cannot be part of reaction. Tranforming to Unknown
-[Label:c7a74]	 Label cannot be part of reaction. Tranforming to Unknown
 [Label:d39b6]	 Label cannot be part of reaction. Tranforming to Unknown
 [Label:eac4b]	 Label cannot be part of reaction. Tranforming to Unknown
 [Label:fa958]	 Label cannot be part of reaction. Tranforming to Unknown
-[Label:b80f4]	 Label cannot be part of reaction. Tranforming to Unknown
-[Label:bbd7b]	 Label cannot be part of reaction. Tranforming to Unknown
-[Label:d6dc8]	 Label cannot be part of reaction. Tranforming to Unknown
-[Label:e5f64]	 Label cannot be part of reaction. Tranforming to Unknown
 [Label:f4f5e]	 Label cannot be part of reaction. Tranforming to Unknown
 [Label:f1028]	 Label cannot be part of reaction. Tranforming to Unknown
-[Label:f28cb]	 Label cannot be part of reaction. Tranforming to Unknown
 [UnknownPositiveInfluenceReaction:b29f5]	Reaction should contain only one reactant and one product.
 [UnknownPositiveInfluenceReaction:e6f5b]	Reaction should contain only one reactant and one product.
 [UnknownPositiveInfluenceReaction:f3e23]	Reaction should contain only one reactant and one product.