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mkutmon edited this page Apr 24, 2013 · 5 revisions
  1. Create GPML importer from local file -> Tina

2a) Pathway model and view -> Alex

2b) Network model and view -> Tina

  1. Webservice connection (make sure only analysis collection is used) -> Tina

  2. Unification step (BridgeDb webservice) - Ensembl for GeneProduct and Protein, HMDB for metabolites -> Alex

5a) Settings and defaults - view option, unification on vs. off -> dialog -> Tina 5b) Context menu (right click on pathway) - create other view -> Alex 5c) Add warning when in pathway view and user wants to apply layout - "Do you want to use the network version of this pathway? This view is not intended for automatic layouts." -> Alex

  1. Copy/Paste - use case: extending pathway in pathway view and then copy-pasting whole pathway into PathVisio -> currently unknown if we could simply port it -> Alex

  2. Export - if GPML attributes are not defined - use defaults, ask for attributes for label, id and datasource -> Tina

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