Package structure

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mkutmon edited this page Apr 23, 2013 · 8 revisions

WikiPathways app package structure

Currently the package structure is main.java.org.cytoscape.wikipathways.app.

import of GPML file
export of GPML file
webservice connection to search, browse and open pathways from WikiPathways
visual style for WikiPathways pathways in Cytoscape
data model - for pathway and network view
properties and settings
dialogs
actions

Test structure with JUnit tests should be in test.java.org.cytoscape.wikipathways.app

Suggestion:

org.cytoscape.wikipathways.app -> API for other apps
org.cytoscape.wikipathways.app.internal -> Activator
org.cytoscape.wikipathways.app.internal.actions -> action classes
org.cytoscape.wikipathways.app.internal.dialogs -> dialogs for the plugin
org.cytoscape.wikipathways.app.internal.export -> export functionality
org.cytoscape.wikipathways.app.internal.import -> import functionality
org.cytoscape.wikipathways.app.internal.model -> data model
org.cytoscape.wikipathways.app.internal.utils -> properties and settings
org.cytoscape.wikipathways.app.internal.visual -> visual style and mapping
org.cytoscape.wikipathways.app.internal.webservice -> webservice code