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v0.2.4: Bugfixes and other improvements
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@widdowquinn widdowquinn released this 10 Aug 10:06
· 1647 commits to master since this release
v0.2.4
fa8fb58
  • ANIm now uses delta-filter to remove alignments of repeat regions (issue #91)
  • added --filter_exe option to specify location of delta-filter utility (issue #91)
  • fixed --format option so that GenBank downloads work again (issue #89)
  • add --SGEargs option to average_nucleotide_identity.py for custom qsub settings
  • README.md badges now clickable
  • --version switch added to average_nucleotide_identity.py
  • FTP timeouts are now caught differently in genbank_get_genomes_by_taxon.py
  • Additional characters in NCBI FTP URIs now escaped in genbank_get_genomes_by_taxon.py - should be fewer failed downloads
  • Modified error messaging when NUCmer alignment fails
  • average_nucleotide_identity.py argument documentation improvements
  • Script now fails immediately if label or class files missing (issue #78)
  • Changes to --noclobber log behaviour (issue #79)
  • fixed --rerender code (issue #85)
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