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Issues list

add pyani dnadiff subcommand enhancement something we'd like pyani to do that it doesn't already
#424 opened Mar 19, 2024 by kiepczi 0.3.1
Rationalise documentation documentation documentation is unclear or incomplete
#392 opened Apr 27, 2022 by widdowquinn 0.3.0
Use alembic to manage SQLite schema changes? enhancement something we'd like pyani to do that it doesn't already
#378 opened Jan 28, 2022 by widdowquinn 0.3.0
NUCmer job generation for large jobs slows down rapidly. bug something isn't working how it should enhancement something we'd like pyani to do that it doesn't already
#306 opened Jul 7, 2021 by widdowquinn 0.3.1
Make version_0_2 the default branch and rename master to version_0_3 documentation documentation is unclear or incomplete VERSION_2 issues relating to version 0.2.x of pyani
#248 opened Apr 14, 2021 by widdowquinn 0.3.0
Add SLURM support enhancement something we'd like pyani to do that it doesn't already HIGH PRIORITY high priority issue interface issues related to how the user tells pyani to do something
#215 opened Aug 3, 2020 by widdowquinn 0.3.0
Adopt concurrent.futures in place of multiprocessing enhancement something we'd like pyani to do that it doesn't already performance the issue relates to making pyani more efficient
#194 opened Jun 6, 2020 by widdowquinn 0.3.0
Add label propagation classifier to pyani for taxon determination enhancement something we'd like pyani to do that it doesn't already method the issue relates to how results are calculated
#188 opened May 29, 2020 by widdowquinn 0.3.0
Add pyani tree subcommand enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something
#187 opened May 25, 2020 by widdowquinn 0.3.1
Add pyani evolve command. enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something method the issue relates to how results are calculated
#180 opened Feb 27, 2020 by widdowquinn 0.3.1
Add pyani wANI subcommand enhancement something we'd like pyani to do that it doesn't already method the issue relates to how results are calculated
#156 opened Oct 3, 2019 by widdowquinn 0.3.2
Add pyani gANI subcommand enhancement something we'd like pyani to do that it doesn't already method the issue relates to how results are calculated
#155 opened Oct 3, 2019 by widdowquinn 0.3.2
Update logging exceptions enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something style clean conformance to style guides and preferences
#152 opened Oct 2, 2019 by widdowquinn 0.3.0
pyani classifyImplement graph theory classifier (cliques) enhancement something we'd like pyani to do that it doesn't already method the issue relates to how results are calculated
#150 opened Oct 2, 2019 by widdowquinn 0.3.0
Flask interface onto SQLite3 backend enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something
#148 opened Oct 2, 2019 by widdowquinn 0.3.3
Pipe third-party tool output or write to temp location enhancement something we'd like pyani to do that it doesn't already performance the issue relates to making pyani more efficient
#147 opened Oct 2, 2019 by widdowquinn 0.3.0
Have pyani use a user-controlled config file enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something
#146 opened Oct 2, 2019 by widdowquinn 0.3.0
Add explicit warnings for zero-identity comparison runs enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something
#145 opened Oct 1, 2019 by widdowquinn 0.3.0
Add pyani mash subcommand enhancement something we'd like pyani to do that it doesn't already method the issue relates to how results are calculated
#137 opened Jun 21, 2019 by widdowquinn 0.3.2
Use JSON for labels/classes files enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something
#136 opened Jun 21, 2019 by widdowquinn 0.3.1
Add pyani subsample command enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something method the issue relates to how results are calculated
#135 opened Jun 21, 2019 by widdowquinn 0.3.1
pyani anim loads sequences into database before checking class/label files enhancement something we'd like pyani to do that it doesn't already performance the issue relates to making pyani more efficient
#129 opened Mar 14, 2019 by widdowquinn 0.3.0
Implement tetra on development branch enhancement something we'd like pyani to do that it doesn't already method the issue relates to how results are calculated
#124 opened Nov 30, 2018 by widdowquinn 0.3.0
Implement anib on development branch enhancement something we'd like pyani to do that it doesn't already method the issue relates to how results are calculated
#123 opened Nov 30, 2018 by widdowquinn 0.3.0
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