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Use something we'd like pyani to do that it doesn't already
alembic
to manage SQLite schema changes?
enhancement
ValueError: zero-size array to reduction operation minimum which has no identity
bug
something isn't working how it should
NUCmer job generation for large jobs slows down rapidly.
bug
something isn't working how it should
enhancement
something we'd like pyani to do that it doesn't already
Make documentation is unclear or incomplete
VERSION_2
issues relating to version 0.2.x of pyani
version_0_2
the default branch and rename master
to version_0_3
documentation
Add SLURM support
enhancement
something we'd like pyani to do that it doesn't already
HIGH PRIORITY
high priority issue
interface
issues related to how the user tells pyani to do something
Adopt something we'd like pyani to do that it doesn't already
performance
the issue relates to making pyani more efficient
concurrent.futures
in place of multiprocessing
enhancement
Add label propagation classifier to something we'd like pyani to do that it doesn't already
method
the issue relates to how results are calculated
pyani
for taxon determination
enhancement
Add something we'd like pyani to do that it doesn't already
interface
issues related to how the user tells pyani to do something
pyani tree
subcommand
enhancement
Add something we'd like pyani to do that it doesn't already
interface
issues related to how the user tells pyani to do something
method
the issue relates to how results are calculated
pyani evolve
command.
enhancement
Add something we'd like pyani to do that it doesn't already
method
the issue relates to how results are calculated
pyani wANI
subcommand
enhancement
Add something we'd like pyani to do that it doesn't already
method
the issue relates to how results are calculated
pyani gANI
subcommand
enhancement
Update logging exceptions
enhancement
something we'd like pyani to do that it doesn't already
interface
issues related to how the user tells pyani to do something
style clean
conformance to style guides and preferences
pyani classify
Implement graph theory classifier (cliques)
enhancement
Flask interface onto SQLite3 backend
enhancement
something we'd like pyani to do that it doesn't already
interface
issues related to how the user tells pyani to do something
Pipe third-party tool output or write to temp location
enhancement
something we'd like pyani to do that it doesn't already
performance
the issue relates to making pyani more efficient
Have something we'd like pyani to do that it doesn't already
interface
issues related to how the user tells pyani to do something
pyani
use a user-controlled config file
enhancement
Add explicit warnings for zero-identity comparison runs
enhancement
something we'd like pyani to do that it doesn't already
interface
issues related to how the user tells pyani to do something
Add something we'd like pyani to do that it doesn't already
method
the issue relates to how results are calculated
pyani mash
subcommand
enhancement
Use JSON for labels/classes files
enhancement
something we'd like pyani to do that it doesn't already
interface
issues related to how the user tells pyani to do something
Add something we'd like pyani to do that it doesn't already
interface
issues related to how the user tells pyani to do something
method
the issue relates to how results are calculated
pyani subsample
command
enhancement
pyani anim
loads sequences into database before checking class/label files
enhancement
Implement something we'd like pyani to do that it doesn't already
method
the issue relates to how results are calculated
tetra
on development
branch
enhancement
Implement something we'd like pyani to do that it doesn't already
method
the issue relates to how results are calculated
anib
on development
branch
enhancement
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