Add warning about parentheses in fasta file names

widdowquinn · Dec 19, 2021 · 0e209db · 0e209db
1 parent c2b531b
commit 0e209db
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/bin/average_nucleotide_identity.py b/bin/average_nucleotide_identity.py
@@ -904,6 +904,11 @@ def subsample_input(infiles):
             logger.error("This will cause issues with MUMmer and BLAST")
             logger.error("(exiting)")
             sys.exit(1)
+        if any(['(' in fname, ')' in fname]):
+            logger.error("File or directory '%s' contains parentheses", fname)
+            logger.error("This will cause issues with MUMmer and BLAST")
+            logger.error("(exiting)")
+            sys.exit(1)
 
     if args.labels and not os.path.isfile(args.labels):
         logger.error("Missing labels file: %s", args.labels)