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Add (minimal) ProForma support in
mokapot.picked_protein.strip_peptides
#130
opened Oct 24, 2024 by
RalfG
updated Jan 14, 2025
[Upgrade] Migrate from Pandas to Polars
enhancement
New feature or request
#89
opened Jan 26, 2023 by
wfondrie
updated Dec 6, 2024
Consolidate naming of LinearPSMDataset OnDiskPSMDataset
#122
opened Aug 1, 2024 by
gessulat
updated Dec 6, 2024
[Issue] docker build stage does not get tested in CI
#129
opened Oct 8, 2024 by
jspaezp
updated Oct 8, 2024
Enzyme Free Digestion results in "0 digested proteins"
#117
opened Dec 18, 2023 by
jonathan-krieger-bruker
updated Sep 6, 2024
Chunksize should be derived from MEMORY env variable
#123
opened Aug 1, 2024 by
gessulat
updated Aug 1, 2024
3 tasks
Revert file suffix change for output files
#121
opened Aug 1, 2024 by
gessulat
updated Aug 1, 2024
1 task
Mokapot sub commands and
brew()
restructuring
#110
opened Oct 4, 2023 by
gessulat
updated Jul 26, 2024
4 tasks
[Feature Request] mokapot output as a pepXML file
#118
opened Apr 20, 2024 by
sciordia
updated Apr 20, 2024
Issue with decoy prefix when trying to get protein level confidence.
#114
opened Nov 9, 2023 by
louisebuur
updated Nov 10, 2023
Can't get protein level confidence. "IndexError: index -3 is out of bounds for axis 0 with size 1"
#113
opened Nov 1, 2023 by
roushrsh
updated Nov 9, 2023
[Question] executable(e.g. pyinstaller)
enhancement
New feature or request
#101
opened Apr 19, 2023 by
timosachsenberg
updated Oct 16, 2023
Multi-threaded writing of output files
#107
opened Sep 21, 2023 by
gessulat
updated Sep 29, 2023
2 tasks
WIP: intermediary file format specification
#108
opened Sep 21, 2023 by
gessulat
updated Sep 21, 2023
3 tasks
Decoy Prefix results in many unmapped peptides
#102
opened Jun 19, 2023 by
jonathan-krieger-bruker
updated Sep 11, 2023
Combine mokapot scores from multiple files
enhancement
New feature or request
#97
opened Apr 6, 2023 by
wfondrie
updated Apr 6, 2023
[Feature Request] Explicit support for DIA results.
#37
opened Aug 12, 2021 by
wfondrie
updated Aug 12, 2021
[Upgrade] Use pytest-datadir to manage data files for tests
#34
opened Jul 15, 2021 by
wfondrie
updated Jul 26, 2021
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