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Issues list

[BUG] FDR to QValue Numba Typing Error
#134 opened Jan 23, 2025 by singjc updated Jan 28, 2025
[Upgrade] Migrate from Pandas to Polars enhancement New feature or request
#89 opened Jan 26, 2023 by wfondrie updated Dec 6, 2024
Consolidate naming of LinearPSMDataset OnDiskPSMDataset
#122 opened Aug 1, 2024 by gessulat updated Dec 6, 2024
[Issue] docker build stage does not get tested in CI
#129 opened Oct 8, 2024 by jspaezp updated Oct 8, 2024
Also load scaler when loading model
#124 opened Aug 1, 2024 by gessulat updated Aug 1, 2024
1 task
Chunksize should be derived from MEMORY env variable
#123 opened Aug 1, 2024 by gessulat updated Aug 1, 2024
3 tasks
Revert file suffix change for output files
#121 opened Aug 1, 2024 by gessulat updated Aug 1, 2024
1 task
Mokapot sub commands and brew() restructuring
#110 opened Oct 4, 2023 by gessulat updated Jul 26, 2024
4 tasks
File schema via pydantic
#109 opened Sep 21, 2023 by gessulat updated Jul 26, 2024
3 tasks
Remove MSAID's SQLite output support
#120 opened Jul 26, 2024 by gessulat updated Jul 26, 2024
[Feature Request] mokapot output as a pepXML file
#118 opened Apr 20, 2024 by sciordia updated Apr 20, 2024
[Question] executable(e.g. pyinstaller) enhancement New feature or request
#101 opened Apr 19, 2023 by timosachsenberg updated Oct 16, 2023
Multi-threaded writing of output files
#107 opened Sep 21, 2023 by gessulat updated Sep 29, 2023
2 tasks
WIP: intermediary file format specification
#108 opened Sep 21, 2023 by gessulat updated Sep 21, 2023
3 tasks
Decoy Prefix results in many unmapped peptides
#102 opened Jun 19, 2023 by jonathan-krieger-bruker updated Sep 11, 2023
Combine mokapot scores from multiple files enhancement New feature or request
#97 opened Apr 6, 2023 by wfondrie updated Apr 6, 2023
[Feature Request] Explicit support for DIA results.
#37 opened Aug 12, 2021 by wfondrie updated Aug 12, 2021
[Upgrade] Use pytest-datadir to manage data files for tests
#34 opened Jul 15, 2021 by wfondrie updated Jul 26, 2021
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