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Issues62 (62)

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62 results

inwdecoster/nanocomp (press backspace or delete to remove)

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wdecoster/nanocomp

Incorrect color scheme for 'Comparing throughput in bases'

Hi, Thanks for a great tool. I m having a problem similar to that of #47, but the out-of-sync colour scheme occurs with the Comparing throughput in bases plot. It mentions that this should be fixed in ...

• ethering
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• 1
·
• Opened 
  on Dec 9, 2024
·
• #79

wdecoster/nanocomp

NanoComp_quals_violin question

Hi, thank you for a great tool! I have a question to the violin plot called NanoComp_quals_violin. The Y axis reads Average base call quality score , so I was wondering if the plot represents read quality ...

• MariBGO
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• 1
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• Opened 
  on Jul 3, 2024
·
• #78

wdecoster/nanocomp

Compare reads in two FASTQ files based on ReadID

Hi @wdecoster I am interested in the pairwise identity between each read in two FASTQ both basecalled on the same FAST5 files but with different software, such as Guppy or Dorado. This work was to compared ...

• LogCrab
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• 2
·
• Opened 
  on May 7, 2024
·
• #77

wdecoster/nanocomp

Error printing whole nanocomp report

Hi Wouter, I used nanocomp to compare different runs on technical samples. It runs well before printing the whole report. Please see the errors below. This may be related to the issue #41 I will give ...

• NikoLichi
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• 11
·
• Opened 
  on Mar 21, 2024
·
• #76

wdecoster/nanocomp

Empty JSON files / want to format and edit font along plot axes

Hi, I was intending to edit/generate more readable plots by adjusting the font size / bolding the text along the axes. I tried adding the format option to create a JSON file for each of the generated ...

• HornDW
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• 5
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• Opened 
  on Jan 3, 2024
·
• #75

wdecoster/nanocomp

multiple fastq files

Is it possible to use nanocomp to compar runs if each run contain several fastq.gz files ?

• lfrangeu
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• 3
·
• Opened 
  on Nov 16, 2023
·
• #74

wdecoster/nanocomp

Got negative values on weighted histogram plot

Hello, I am using NanoComp v1.23.1 and got a weird plot after filtering my input fastq files (see attached image). Screenshot 2023-09-22 163016 When I did the same command on input fastq which were not ...

• najohink
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• 8
·
• Opened 
  on Sep 22, 2023
·
• #73

wdecoster/nanocomp

A process in the process pool was terminated abruptly while the future was running or pending.

Hi, I m new to using the NanoComp tool and have successfully generated reports before, for reference this run was using a rather large BAM file ~73 GB in size and attempting to compare it to another BAM ...

• HornDW
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• 8
·
• Opened 
  on Aug 3, 2023
·
• #72

wdecoster/nanocomp

No static plots are saved due to some kaleido problem

Hi, It seems that NanoComp 1.22.0 is having this problem- 2023-07-07 13:53:55,634 Using sequenced read lengths for plotting. 2023-07-07 13:54:55,236 NanoComp: Creating barplots for number of reads and ...

• prasundutta87
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• 4
·
• Opened 
  on Jul 7, 2023
·
• #71

wdecoster/nanocomp

Scaling problem in OverlayHistograms?

Hi Wouter, we have noticed that the length violin plots do not necessarily fit with the Length Histograms when using several samples. Plots were created using v.1.22.0 but I tried the latest version and ...

• jd3234
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• 1
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• Opened 
  on Jul 5, 2023
·
• #70

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