Updates to reaktoro defaults and inclusion of exclusion options #90

Job	Run time
Check code is formatted (Black)	9s
pytest (linux/3.9/dev)	3m 11s
pytest (win64/3.9/dev)	16m 41s
pytest (linux/3.10/dev)	3m 17s
pytest (win64/3.10/dev)	14m 4s
pytest (linux/3.11/dev)	3m 48s
pytest (win64/3.11/dev)	10m 38s
pytest (linux/3.12/dev)	3m 18s
pytest (win64/3.12/dev)	15m 37s
	1h 10m 43s

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