Updates to reaktoro defaults and inclusion of exclusion options #86

Job	Run time
Check code is formatted (Black)	7s
pytest (linux/3.9/dev)	3m 9s
pytest (win64/3.9/dev)	9m 55s
pytest (linux/3.10/dev)	3m 7s
pytest (win64/3.10/dev)	14m 38s
pytest (linux/3.11/dev)	3m 32s
pytest (win64/3.11/dev)	13m 12s
pytest (linux/3.12/dev)	3m 11s
pytest (win64/3.12/dev)	9m 25s
	1h 0m 16s

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