Second try at fixing doc links

docs/battle_anim_commands.md

@@ -1,6 +1,6 @@
 # Battle Animation Commands
 
-Defined in [macros/scripts/battle_anims.asm](https://github.com/pret/pokecrystal/macros/scripts/battle_anims.asm) and [engine/battle_anims/anim_commands.asm:BattleAnimCommands](https://github.com/pret/pokecrystal/engine/battle_anims/anim_commands.asm).
+Defined in [macros/scripts/battle_anims.asm](https://github.com/pret/pokecrystal/blob/master/macros/scripts/battle_anims.asm) and [engine/battle_anims/anim_commands.asm:BattleAnimCommands](https://github.com/pret/pokecrystal/blob/master/engine/battle_anims/anim_commands.asm).
 
 
 ## `$00`−`$CF`: <code>anim_wait <i>length</i></code>
@@ -14,7 +14,7 @@ Defined in [macros/scripts/battle_anims.asm](https://github.com/pret/pokecrystal
 
 Spawns an *object* at coordinate (*x*, *y*).
 
-- *object*: `ANIM_OBJ` constants (see [constants/battle_anim_constants.asm](https://github.com/pret/pokecrystal/constants/battle_anim_constants.asm))
+- *object*: `ANIM_OBJ` constants (see [constants/battle_anim_constants.asm](https://github.com/pret/pokecrystal/blob/master/constants/battle_anim_constants.asm))
 - *x*: the x position in pixels
 - *y*: the y position in pixels
 - *x_tile*: an added x position in tiles (8 pixels)
@@ -45,7 +45,7 @@ The y position also depends on the y offset defined by the object.
 
 Loads 1-5 sets of graphics. Will overwrite any previously loaded sets.
 
-- *gfx*: `ANIM_GFX` constants (see [constants/battle_anim_constants.asm](https://github.com/pret/pokecrystal/constants/battle_anim_constants.asm))
+- *gfx*: `ANIM_GFX` constants (see [constants/battle_anim_constants.asm](https://github.com/pret/pokecrystal/blob/master/constants/battle_anim_constants.asm))
 
 Caveats:
 - These will override any currently-loaded GFX.
@@ -74,7 +74,7 @@ Objects are state machines. `anim_setobj` changes the state of an object.
 
 Increments a bg effect's state.
 
-- *bg_effect*: `ANIM_BG` constants (see [constants/battle_anim_constants.asm](https://github.com/pret/pokecrystal/constants/battle_anim_constants.asm))
+- *bg_effect*: `ANIM_BG` constants (see [constants/battle_anim_constants.asm](https://github.com/pret/pokecrystal/blob/master/constants/battle_anim_constants.asm))
 
 Since there can't be two of the same bg effect, the effect type is used. This is distinct from `anim_incobj`.
 
@@ -94,7 +94,7 @@ Caveats:
 
 ## `$DB`: `anim_checkpokeball`
 
-Sets `BattleAnimVar` to the result of [GetPokeBallWobble](https://github.com/pret/pokecrystal/engine/battle_anims/pokeball_wobble.asm).
+Sets `BattleAnimVar` to the result of [GetPokeBallWobble](https://github.com/pret/pokecrystal/blob/master/engine/battle_anims/pokeball_wobble.asm).
 
 
 ## `$DC`: `anim_transform`
@@ -179,7 +179,7 @@ Jumps to another script and decrements `param` until it reaches 0. Similar to `a
 
 ## `$F0`: <code>anim_bgeffect <i>bg_effect</i>, <i>unknown1</i>, <i>unknown2</i>, <i>unknown3</i></code>
 
-- *bg_effect*: `ANIM_BG` constants (see [constants/battle_anim_constants.asm](https://github.com/pret/pokecrystal/constants/battle_anim_constants.asm))
+- *bg_effect*: `ANIM_BG` constants (see [constants/battle_anim_constants.asm](https://github.com/pret/pokecrystal/blob/master/constants/battle_anim_constants.asm))
 
 
 ## `$F1`: <code>anim_bgp <i>colors</i></code>

docs/event_commands.md

@@ -1,6 +1,6 @@
 # Event Commands
 
-Defined in [macros/scripts/events.asm](https://github.com/pret/pokecrystal/macros/scripts/events.asm) and [engine/overworld/scripting.asm:ScriptCommandTable](https://github.com/pret/pokecrystal/engine/overworld/scripting.asm).
+Defined in [macros/scripts/events.asm](https://github.com/pret/pokecrystal/blob/master/macros/scripts/events.asm) and [engine/overworld/scripting.asm:ScriptCommandTable](https://github.com/pret/pokecrystal/blob/master/engine/overworld/scripting.asm).
 
 Until this document is filled out, the [G/S Scripting Compendium](https://hax.iimarckus.org/files/scriptingcodes_eng.htm) has descriptions for most of these commands. It was written for G/S binary hacking and not Crystal assembly hacking, so it's not 100% accurate for pokecrystal.
 

docs/index.md

@@ -1,28 +1,28 @@
-These pages are for documenting pieces of the [pokecrystal](https://github.com/pret/pokecrystal) disassembly project. For more information, please see its [README.md](https://github.com/pret/pokecrystal/README.md) and [wiki](https://github.com/pret/pokecrystal/wiki).
+These pages are for documenting pieces of the [pokecrystal](https://github.com/pret/pokecrystal) disassembly project. For more information, please see its [README.md](https://github.com/pret/pokecrystal/blob/master/README.md) and [wiki](https://github.com/pret/pokecrystal/blob/master/wiki).
 
 
 ## Issues with the source code
 
-- [bugs_and_glitches.md](https://github.com/pret/pokecrystal/docs/bugs_and_glitches.md)
-- [design_flaws.md](https://github.com/pret/pokecrystal/docs/design_flaws.md)
+- [bugs_and_glitches.md](https://github.com/pret/pokecrystal/blob/master/docs/bugs_and_glitches.md)
+- [design_flaws.md](https://github.com/pret/pokecrystal/blob/master/docs/design_flaws.md)
 
 
 ## Map event scripts
 
-- [map_event_scripts.md](https://github.com/pret/pokecrystal/docs/map_event_scripts.md)
-- [event_commands.md](https://github.com/pret/pokecrystal/docs/event_commands.md)
-- [movement_commands.md](https://github.com/pret/pokecrystal/docs/movement_commands.md)
-- [text_commands.md](https://github.com/pret/pokecrystal/docs/text_commands.md)
+- [map_event_scripts.md](https://github.com/pret/pokecrystal/blob/master/docs/map_event_scripts.md)
+- [event_commands.md](https://github.com/pret/pokecrystal/blob/master/docs/event_commands.md)
+- [movement_commands.md](https://github.com/pret/pokecrystal/blob/master/docs/movement_commands.md)
+- [text_commands.md](https://github.com/pret/pokecrystal/blob/master/docs/text_commands.md)
 
 
 ## Other types of scripts
 
-- [battle_anim_commands.md](https://github.com/pret/pokecrystal/docs/battle_anim_commands.md)
-- [move_effect_commands.md](https://github.com/pret/pokecrystal/docs/move_effect_commands.md)
-- [music_commands.md](https://github.com/pret/pokecrystal/docs/music_commands.md)
+- [battle_anim_commands.md](https://github.com/pret/pokecrystal/blob/master/docs/battle_anim_commands.md)
+- [move_effect_commands.md](https://github.com/pret/pokecrystal/blob/master/docs/move_effect_commands.md)
+- [music_commands.md](https://github.com/pret/pokecrystal/blob/master/docs/music_commands.md)
 
 
 ## Other subsystems
 
-- [pic_animations.md](https://github.com/pret/pokecrystal/docs/pic_animations.md)
-- [menus.md](https://github.com/pret/pokecrystal/docs/menus.md)
+- [pic_animations.md](https://github.com/pret/pokecrystal/blob/master/docs/pic_animations.md)
+- [menus.md](https://github.com/pret/pokecrystal/blob/master/docs/menus.md)

docs/move_effect_commands.md

@@ -1,6 +1,6 @@
 # Move Effect Commands
 
-Defined in [macros/scripts/battle_commands.asm](https://github.com/pret/pokecrystal/macros/scripts/battle_commands.asm) and [data/battle/effect_command_pointers.asm:BattleCommandPointers](https://github.com/pret/pokecrystal/data/battle/effect_command_pointers.asm).
+Defined in [macros/scripts/battle_commands.asm](https://github.com/pret/pokecrystal/blob/master/macros/scripts/battle_commands.asm) and [data/battle/effect_command_pointers.asm:BattleCommandPointers](https://github.com/pret/pokecrystal/blob/master/data/battle/effect_command_pointers.asm).
 
 
 ## `$01`: `checkturn`

docs/movement_commands.md

@@ -1,6 +1,6 @@
 # Movement Commands
 
-Defined in [macros/scripts/movement.asm](https://github.com/pret/pokecrystal/macros/scripts/movement.asm) and [engine/overworld/movement.asm:MovementPointers](https://github.com/pret/pokecrystal/engine/overworld/movement.asm).
+Defined in [macros/scripts/movement.asm](https://github.com/pret/pokecrystal/blob/master/macros/scripts/movement.asm) and [engine/overworld/movement.asm:MovementPointers](https://github.com/pret/pokecrystal/blob/master/engine/overworld/movement.asm).
 
 
 ## `$00`−`$03`: <code>turn_head <i>direction</i></code>

docs/music_commands.md

@@ -1,8 +1,8 @@
 # Music Commands
 
-Defined in [macros/scripts/audio.asm](https://github.com/pret/pokecrystal/macros/scripts/audio.asm) and [audio/engine.asm:MusicCommands](https://github.com/pret/pokecrystal/audio/engine.asm).
+Defined in [macros/scripts/audio.asm](https://github.com/pret/pokecrystal/blob/master/macros/scripts/audio.asm) and [audio/engine.asm:MusicCommands](https://github.com/pret/pokecrystal/blob/master/audio/engine.asm).
 
-*See also: [Sound Engine Commands](https://github.com/pret/pokecrystal/wiki/Sound-Engine-Commands)*
+*See also: [Sound Engine Commands](https://github.com/pret/pokecrystal/blob/master/wiki/Sound-Engine-Commands)*
 
 
 ## <code>musicheader <i>n</i>, <i>index</i>, <i>address</i></code>

docs/pic_animations.md

@@ -1,6 +1,6 @@
 # Pic Animations
 
-Defined in [macros/scripts/gfx_anims.asm](https://github.com/pret/pokecrystal/macros/scripts/gfx_anims.asm).
+Defined in [macros/scripts/gfx_anims.asm](https://github.com/pret/pokecrystal/blob/master/macros/scripts/gfx_anims.asm).
 
 Pic animations are assembled in 3 parts:
 
@@ -19,12 +19,12 @@ Pic animations are assembled in 3 parts:
 
 Animation data is in these files:
 
-- [gfx/pokemon/anims.asm](https://github.com/pret/pokecrystal/gfx/pokemon/anims.asm):
+- [gfx/pokemon/anims.asm](https://github.com/pret/pokecrystal/blob/master/gfx/pokemon/anims.asm):
   Main animations (played everywhere)
 
-- [gfx/pokemon/idles.asm](https://github.com/pret/pokecrystal/gfx/pokemon/idles.asm):
+- [gfx/pokemon/idles.asm](https://github.com/pret/pokecrystal/blob/master/gfx/pokemon/idles.asm):
   Idle animations, appended to the main animation.  
   Used in the status screen (blinking, tail wags etc.)
 
-- [gfx/pokemon/unown_anims.asm](https://github.com/pret/pokecrystal/gfx/pokemon/unown_anims.asm) and [gfx/pokemon/unown_idles.asm](https://github.com/pret/pokecrystal/gfx/pokemon/unown_idles.asm):
+- [gfx/pokemon/unown_anims.asm](https://github.com/pret/pokecrystal/blob/master/gfx/pokemon/unown_anims.asm) and [gfx/pokemon/unown_idles.asm](https://github.com/pret/pokecrystal/blob/master/gfx/pokemon/unown_idles.asm):
   Unown has its own animation data despite having an entry in the main tables.

docs/text_commands.md

@@ -1,6 +1,6 @@
 # Text Commands
 
-Defined in [macros/scripts/text.asm](https://github.com/pret/pokecrystal/macros/scripts/text.asm) and [home/text.asm:TextCommands](https://github.com/pret/pokecrystal/home/text.asm).
+Defined in [macros/scripts/text.asm](https://github.com/pret/pokecrystal/blob/master/macros/scripts/text.asm) and [home/text.asm:TextCommands](https://github.com/pret/pokecrystal/blob/master/home/text.asm).
 
 
 ## `$00`: `text_start`
@@ -108,7 +108,7 @@ Play `SFX_SLOT_MACHINE_START`.
 
 ## `$14`: <code>text_buffer <i>id</i></code>
 
-Write text from one of the following addresses (listed in [data/text_buffers.asm](https://github.com/pret/pokecrystal/data/text_buffers.asm)):
+Write text from one of the following addresses (listed in [data/text_buffers.asm](https://github.com/pret/pokecrystal/blob/master/data/text_buffers.asm)):
 
 0. `StringBuffer3`
 1. `StringBuffer4`