update CLion docker configuration.

virtualcell · Aug 21, 2018 · 768d158 · 768d158
1 parent fdeefb4
commit 768d158
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Showing 4 changed files with 12 additions and 11 deletions.
diff --git a/docker/create.sh b/docker/create.sh
@@ -9,14 +9,14 @@ cd $DIR
 image_name="localhost:5000/vcell-solvers-ide:dev"
 container_name="vcell-solvers-ide"
 
-docker build -f ./Dockerfile-ide --tag $image_name .
+sudo docker build -f ./Dockerfile-ide --tag $image_name .
 if [ $(uname) == "Darwin" ]; then 
 	IP=$(ifconfig en0 | grep inet | awk '$1=="inet" {print $2}')
-	docker create -it --name $container_name -v "$WORKSPACE_DIR:/workspace" -e DISPLAY=$IP:0 $image_name
+	sudo docker create -it --name $container_name -v "$WORKSPACE_DIR:/workspace" -e DISPLAY=$IP:0 $image_name
 elif [ $(uname) == "Linux" ]; then
-	docker create -it --name $container_name --net=host -v /tmp/.X11-unix -v "$WORKSPACE_DIR:/workspace" -e DISPLAY $image_name	
+	sudo docker create -it --name $container_name --net=host -v /tmp/.X11-unix -v "$WORKSPACE_DIR:/workspace" -e DISPLAY $image_name	
 fi
-docker start $container_name
+sudo docker start $container_name
 
 #
 # enabling X11 communication between this host and the Docker container:

diff --git a/docker/destroy.sh b/docker/destroy.sh
@@ -2,6 +2,6 @@
 
 container_name="vcell-solvers-ide"
 
-docker stop $container_name
-docker rm $container_name
+sudo docker stop $container_name
+sudo docker rm $container_name
 
diff --git a/docker/run_bash.sh b/docker/run_bash.sh
@@ -9,13 +9,13 @@ WORKSPACE_DIR="$(cd "$(dirname "$0")"; cd ..; cd ..; pwd)"
 
 container_name="vcell-solvers-ide"
 
-(docker container ls | grep $container_name)>/dev/null
+(sudo docker container ls | grep $container_name)>/dev/null
 if [[ $? -ne 0 ]]; then
 	echo "container not created or not running, call ./create.sh first"
 	exit 1
 fi
 
 echo "starting shell in running container '$container_name', type 'exit' to leave"
-docker container exec -it $container_name /bin/bash
+sudo docker container exec -it $container_name /bin/bash
 
 
diff --git a/docker/run_clion.sh b/docker/run_clion.sh
@@ -6,7 +6,7 @@ WORKSPACE_DIR="$(cd "$(dirname "$0")"; cd ..; cd ..; pwd)"
 
 container_name="vcell-solvers-ide"
 
-(docker container ls | grep $container_name)>/dev/null
+(sudo docker container ls | grep $container_name)>/dev/null
 if [[ $? -ne 0 ]]; then
 	echo "container not created or not running, call ./create.sh first"
 	exit 1
@@ -15,9 +15,10 @@ fi
 if [ $(uname) == "Linux" ]; then
 	echo "adding xauth cookie"
 	XAUTH_COOKIE=$(xauth list | grep `hostname` | head -1)
-	docker exec -i $container_name xauth add $XAUTH_COOKIE
+	echo "sudo docker exec -i $container_name xauth add $XAUTH_COOKIE"
+	sudo docker exec -i $container_name xauth add $XAUTH_COOKIE
 fi
 
 echo "starting clion in running container '$container_name'"
 CLION="/usr/local/opt/clion/bin/clion.sh"
-docker container exec -i $container_name $CLION
+sudo docker container exec -i $container_name $CLION