Fix #43

vib-singlecell-nf · Apr 17, 2020 · c837b65 · c837b65
1 parent 1258d61
commit c837b65
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/bin/feature_selection/sc_find_variable_genes.py b/bin/feature_selection/sc_find_variable_genes.py
@@ -3,6 +3,7 @@
 import argparse
 import os
 import scanpy as sc
+import numpy as np
 import warnings
 
 parser = argparse.ArgumentParser(description='')
@@ -87,7 +88,7 @@
     sc.pp.highly_variable_genes(
         adata,
         min_mean=args.min_mean,
-        max_mean=args.max_mean,
+        max_mean=np.inf if args.max_mean is None else args.max_mean,
         min_disp=args.min_disp,
         max_disp=args.max_disp
     )