bugfixes

vanheeringen-lab · May 19, 2016 · c2390e1 · c2390e1
1 parent fb385e5
commit c2390e1
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/gimmemotifs/config.py b/gimmemotifs/config.py
@@ -10,7 +10,7 @@
 import os
 
 ### CONSTANTS ###
-GM_VERSION = "0.9.0.5"
+GM_VERSION = "0.9.0.6"
 BG_TYPES = ["random", "genomic", "gc", "promoter"]
 FA_VALID_BGS = ["random", "promoter", "gc", "user", "genomic"]
 BED_VALID_BGS = ["random", "genomic", "gc", "promoter", "user"]

diff --git a/gimmemotifs/scanner.py b/gimmemotifs/scanner.py
@@ -319,7 +319,8 @@ def _get_seqs_type(self, seqs):
                     if region_p.search(line):
                         return "regionfile"
                     else:
-                        if line.split("\t"):
+                        vals = line.split("\t")
+                        if len(vals) >= 3:
                             int(vals[1]), int(vals[2])
                             return "bedfile"
                 except:
@@ -358,7 +359,7 @@ def scan(self, seqs, nreport=100, scan_rc=True, cutoff=0.95):
     def _scan_regions(self, regions, nreport, scan_rc, cutoff=0.95):
         index_dir = self.index_dir
         motif_file = self.motifs
-        motif_digest = self.checksum[motif_file]
+        motif_digest = self.checksum.get(motif_file, None)
 
         # determine which regions are not in the cache 
         scan_regions = regions