An R package for microbiome analysis combining the phyloseq
, metacodeR
, and microbiome
packages into an easy to use and full featured microbiome analysis package.
- Standardization of data processing.
- Phyloseq for data import.
- MicrobiomeR for data validation and preprocessing.
- Metacoder for data analysis.
- Ggplot2 for data visualization.
- Publication ready figures for various ranks.
- Metacoder Heat Trees
- MicrobiomeR Correlation Plots
- MicrobiomeR Stacked Bar Charts
- Easily access taxonomic ranks from data objects.
- Import various data types from different pipelines.
install.packages("MicrobiomeR")
- Code Style based on Google's R style developed by Hadley Wickham.