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MicrobiomeR

An R package for microbiome analysis combining the phyloseq, metacodeR, and microbiome packages into an easy to use and full featured microbiome analysis package.

Features

  • Standardization of data processing.
    • Phyloseq for data import.
    • MicrobiomeR for data validation and preprocessing.
    • Metacoder for data analysis.
    • Ggplot2 for data visualization.
  • Publication ready figures for various ranks.
    • Metacoder Heat Trees
    • MicrobiomeR Correlation Plots
    • MicrobiomeR Stacked Bar Charts
  • Easily access taxonomic ranks from data objects.
  • Import various data types from different pipelines.

Installation

install.packages("MicrobiomeR")

Notes

  • Code Style based on Google's R style developed by Hadley Wickham.