DESCRIPTION

Package: MicrobiomeR
Title: Analyze Microbiome Data
Version: 0.1.1
Authors@R: c(
    person("Robert", "Gilmore", email = "rgilmore@umc.edu", role = "cre"),
    person("Shaurita", "Hutchins", email = "shutchins2@umc.edu", role = "aut"))
License: MIT + file LICENSE
biocViews: Metagenomics, Microbiome, Sequencing, SystemsBiology
Description: An R package for microbiome analysis combining functions from phyloseq, metacodeR, 
    and microbiome into an easy to use and full featured microbiome analysis package.
Roxygen: list(markdown = TRUE)
Depends:
    R (>= 3.3.0)
Remotes: 
    github::ropensci/taxa,
    github::grunwaldlab/metacoder,
    github::joey711/phyloseq,
    github::microbiome/microbiome
Imports:
    ape,
    DT,
    data.table,
    diptest,
    dplyr,
    rlang,
    glue,
    metacoder,
    modes,
    openxlsx,
    phyloseq,
    plotly,
    purrr,
    scico,
    taxa,
    tibble,
    tidyr,
    viridis,
    yaml,
    ggplot2,
    stringr,
    rstudioapi,
    magrittr,
    ggpubr,
    ggthemes,
    crayon,
    biomformat,
    microbiome,
    forcats,
    ggrepel,
    scales,
    vegan
Suggests:
    knitr,
    testthat,
    rmarkdown
Additional_repositories:
    http://bioconductor.org/packages/release/bioc/,
    http://bioconductor.org/packages/release/data/annotation,
    http://bioconductor.org/packages/release/data/experiment,
    http://bioconductor.org/packages/release/extra
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
URL: https://github.com/vallenderlab/MicrobiomeR
BugReports: https://github.com/vallenderlab/MicrobiomeR/issues
VignetteBuilder: knitr