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Extensive de-novo TE Annotator

Perl 357 74 Updated Jan 8, 2025

Inference engine for GLiNER models, in Rust

Rust 35 2 Updated Jan 22, 2025

Efficient pythonic random access to fasta subsequences

Python 464 75 Updated Oct 14, 2024

Transcribe Ukrainian with translation to English text to SRT format.

Shell 2 Updated Oct 12, 2024

🦀 Small exercises to get you used to reading and writing Rust code!

Rust 55,898 10,367 Updated Jan 16, 2025

All Algorithms implemented in Python

Python 196,636 46,161 Updated Jan 20, 2025

Protein structure datasets for machine learning.

Python 104 10 Updated Jul 3, 2024

AcrFinder, a tool for automated identification of Acr-Aca loci

Python 7 7 Updated Feb 16, 2023

FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models

Python 107 8 Updated Dec 22, 2024

PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.

Rust 17 Updated Dec 12, 2024

Efficient phylogenetic tree inference for massive taxonomic datasets

C++ 113 5 Updated Sep 17, 2024

Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes

Python 55 1 Updated Dec 20, 2024

An app that brings language models directly to your phone.

TypeScript 1,646 130 Updated Jan 22, 2025

C++ inference engine for running GLiNER (Generalist and Lightweight Named Entity Recognition) models

C++ 23 4 Updated Dec 11, 2024

A DSL for data-driven computational pipelines

Groovy 2,831 651 Updated Jan 22, 2025

A high-performance, zero-overhead, extensible Python compiler using LLVM

C++ 15,301 525 Updated Jan 20, 2025
Python 56 5 Updated Oct 7, 2024

A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.

Python 15 3 Updated Aug 15, 2024

Phage Annotation using Protein Structures

Jupyter Notebook 94 4 Updated Jan 20, 2025

Python compiler

C++ 1,515 166 Updated Sep 12, 2024

Cinder is Meta's internal performance-oriented production version of CPython.

Python 3,555 120 Updated Jan 7, 2025

Python module for detection of CPU features

C 28 6 Updated Jul 22, 2023

Protein structure alignment and search algorithm

C++ 49 3 Updated Jan 22, 2025

Open-source usearch

C++ 107 12 Updated Jun 16, 2024

Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation

Python 64 10 Updated Jan 21, 2025

Implementation for MatMul-free LM.

Python 2,946 187 Updated Nov 5, 2024

Python bindings for the TM-align algorithm and code for protein structure comparison developed by Zhang et al.

Python 33 6 Updated Dec 15, 2024

Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic method for fast database search.

Cython 5 Updated Nov 5, 2024
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