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Sunagawa Lab @ ETH Zürich
- Zürich, Switzerland
- https://orcid.org/0000-0002-0912-4371
- @valentynbez
Highlights
- Pro
Stars
Efficient pythonic random access to fasta subsequences
Transcribe Ukrainian with translation to English text to SRT format.
🦀 Small exercises to get you used to reading and writing Rust code!
All Algorithms implemented in Python
Protein structure datasets for machine learning.
AcrFinder, a tool for automated identification of Acr-Aca loci
FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models
PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.
Efficient phylogenetic tree inference for massive taxonomic datasets
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
An app that brings language models directly to your phone.
C++ inference engine for running GLiNER (Generalist and Lightweight Named Entity Recognition) models
A DSL for data-driven computational pipelines
A high-performance, zero-overhead, extensible Python compiler using LLVM
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
Phage Annotation using Protein Structures
Cinder is Meta's internal performance-oriented production version of CPython.
Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation
Python bindings for the TM-align algorithm and code for protein structure comparison developed by Zhang et al.
Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic method for fast database search.