PRIDICT: PRIme editing guide RNA preDICTion
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Repository containing python package for running trained PRIDICT 1.0 (PRIme editing guide RNA preDICTion) models. prieml package includes modules to setup and run PRIDICT models for predicting prime editing efficiency and product purity.
To run PRIDICT online, see our webapp.
Citation
If you find our work is useful in your research, please cite the following paper:
@article {Mathis et al.,
author = {Mathis, Nicolas and Allam, Ahmed and Kissling, Lucas and Marquart, Kim Fabiano and Schmidheini, Lukas and Solari, Cristina and Balázs, Zsolt and Krauthammer, Michael and Schwank, Gerald},
title = {Predicting prime editing efficiency and product purity by deep learning},
year = {2023},
doi = {10.1038/s41587-022-01613-7},
URL = { https://www.nature.com/articles/s41587-022-01613-7 },
journal = {Nature Biotechnology}
}