WIP: updating dependencies

requirements.dev.txt

@@ -1,25 +1,125 @@
 #
-# This file is autogenerated by pip-compile
-# To update, run:
+# This file is autogenerated by pip-compile with Python 3.9
+# by the following command:
 #
-#    pip-compile
+#    pip-compile --extra=dev --output-file=requirements.dev.txt setup.cfg
 #
---requirement requirements.txt
-attrs==21.2.0             # via pytest
-importlib-metadata==4.8.1  # via pluggy, pytest
-iniconfig==1.1.1          # via pytest
-mirakuru==2.4.1           # via pytest-redis
-packaging==21.0           # via pytest
-pluggy==1.0.0             # via pytest
-port-for==0.6.1           # via pytest-redis
-psutil==5.8.0             # via mirakuru
-py==1.10.0                # via pytest
-pyparsing==2.4.7          # via packaging
-pytest-datadir==1.3.1     # via pytest-datadir
-pytest-mock==3.6.1        # via isacc_messaging (setup.py)
-pytest-redis==2.1.1       # via isacc_messaging (setup.py)
-pytest==6.2.5             # via pytest-mock, pytest-redis, isacc_messaging (setup.py)
-requests-mock==1.9.3      # via isacc_messaging (setup.py)
-toml==0.10.2              # via pytest
-typing-extensions==3.10.0.2  # via importlib-metadata
-zipp==3.5.0               # via importlib-metadata
+attrs==21.2.0
+    # via pytest
+authlib==0.14.3
+    # via isacc_messaging (setup.cfg)
+cachelib==0.13.0
+    # via flask-session
+certifi==2021.5.30
+    # via requests
+cffi==1.14.1
+    # via cryptography
+charset-normalizer==2.0.6
+    # via requests
+click==8.0.1
+    # via flask
+cryptography==3.3.2
+    # via
+    #   authlib
+    #   python-jose
+ecdsa==0.14.1
+    # via python-jose
+fhirclient==4.1.0
+    # via isacc_messaging (setup.cfg)
+flask==1.1.2
+    # via
+    #   flask-cors
+    #   flask-session
+    #   isacc_messaging (setup.cfg)
+flask-cors==4.0.1
+    # via isacc_messaging (setup.cfg)
+flask-session==0.4.1
+    # via isacc_messaging (setup.cfg)
+gunicorn==20.1.0
+    # via isacc_messaging (setup.cfg)
+idna==3.2
+    # via requests
+iniconfig==1.1.1
+    # via pytest
+isodate==0.6.1
+    # via fhirclient
+itsdangerous==2.0.1
+    # via
+    #   flask
+    #   requests-cache
+jinja2==3.0.1
+    # via flask
+markupsafe==2.0.1
+    # via jinja2
+mirakuru==2.4.1
+    # via pytest-redis
+packaging==21.0
+    # via pytest
+pluggy==1.0.0
+    # via pytest
+port-for==0.6.1
+    # via pytest-redis
+psutil==5.8.0
+    # via mirakuru
+py==1.10.0
+    # via pytest
+pyasn1==0.4.8
+    # via
+    #   python-jose
+    #   rsa
+pycparser==2.20
+    # via cffi
+pyjwt==2.8.0
+    # via twilio
+pyparsing==2.4.7
+    # via packaging
+pytest==6.2.5
+    # via
+    #   isacc_messaging (setup.cfg)
+    #   pytest-mock
+    #   pytest-redis
+pytest-mock==3.6.1
+    # via isacc_messaging (setup.cfg)
+pytest-redis==2.1.1
+    # via isacc_messaging (setup.cfg)
+python-jose[cryptography]==3.2.0
+    # via isacc_messaging (setup.cfg)
+python-json-logger==0.1.11
+    # via isacc_messaging (setup.cfg)
+pytz==2024.1
+    # via twilio
+redis==3.5.3
+    # via
+    #   isacc_messaging (setup.cfg)
+    #   pytest-redis
+requests==2.26.0
+    # via
+    #   fhirclient
+    #   isacc_messaging (setup.cfg)
+    #   requests-cache
+    #   requests-mock
+    #   twilio
+requests-cache==0.6.4
+    # via isacc_messaging (setup.cfg)
+requests-mock==1.9.3
+    # via isacc_messaging (setup.cfg)
+rsa==4.7
+    # via python-jose
+six==1.16.0
+    # via
+    #   cryptography
+    #   ecdsa
+    #   isodate
+    #   python-jose
+    #   requests-mock
+    #   url-normalize
+toml==0.10.2
+    # via pytest
+twilio==7.14.1
+    # via isacc_messaging (setup.cfg)
+url-normalize==1.4.3
+    # via requests-cache
+urllib3==1.26.7
+    # via requests
+werkzeug==2.0.1
+    # via flask

requirements.txt

@@ -1,43 +1,57 @@
 #
-# This file is autogenerated by pip-compile
-# To update, run:
+# This file is autogenerated by pip-compile with Python 3.9
+# by the following command:
 #
-#    pip-compile --output-file=requirements.txt
+#    pip-compile --output-file=requirements.txt setup.cfg
 #
-authlib==0.14.3           # via isacc_messaging (setup.py)
-certifi==2021.5.30        # via requests
-cffi==1.14.1              # via cryptography
-charset-normalizer==2.0.6  # via requests
-click==8.0.1              # via flask
-cryptography==3.3.2         # via authlib, python-jose
-ecdsa==0.14.1             # via python-jose
-fhirclient==4.1.0         # via isacc_messaging (setup.py)
-flask==1.1.2              # via isacc_messaging (setup.py)
-gunicorn==20.1.0          # via isacc_messaging (setup.py)
-idna==3.2                 # via requests
-importlib-metadata==4.8.1  # via click
-itsdangerous==2.0.1       # via flask
-jinja2==3.0.1             # via flask
-markupsafe==2.0.1         # via jinja2
-pyasn1==0.4.8             # via python-jose, rsa
-pycparser==2.20           # via cffi
-python-jose[cryptography]==3.2.0  # via isacc_messaging (setup.py)
-python-json-logger==0.1.11  # via isacc_messaging (setup.py)
-redis==3.5.3              # via isacc_messaging (setup.py)
-requests-cache==0.6.4     # via isacc_messaging (setup.py)
-requests==2.26.0          # via requests-cache, isacc_messaging (setup.py)
-rsa==4.7                  # via python-jose
-six==1.16.0               # via ecdsa, flask-cors, url-normalize
-typing-extensions==3.10.0.2  # via importlib-metadata
-url-normalize==1.4.3      # via requests-cache
-urllib3==1.26.7           # via requests, requests-cache
-werkzeug==2.0.1           # via flask
-zipp==3.5.0               # via importlib-metadata
-twilio==7.14.1
-fhirclient==4.1.0
-torch==1.13.0
-transformers==4.24.0
-scipy==1.7.3
-numpy==1.21.5
-pandas==1.3.5
-git+https://github.com/uwcirg/fhir-migrations
+cachelib==0.13.0
+    # via flask-session
+certifi==2021.5.30
+    # via requests
+charset-normalizer==2.0.6
+    # via requests
+click==8.0.1
+    # via flask
+flask==2.0.1
+    # via
+    #   flask-jwt-extended
+    #   flask-session
+    #   patientsearch (setup.cfg)
+flask-jwt-extended==3.24.1
+    # via patientsearch (setup.cfg)
+flask-session==0.3.2
+    # via patientsearch (setup.cfg)
+future==1.0.0
+    # via redis-dict
+gunicorn==20.0.4
+    # via patientsearch (setup.cfg)
+idna==3.2
+    # via requests
+itsdangerous==2.0.1
+    # via flask
+jinja2==3.0.1
+    # via flask
+jmespath==0.10.0
+    # via patientsearch (setup.cfg)
+markupsafe==2.0.1
+    # via jinja2
+pyjwt==1.7.1
+    # via flask-jwt-extended
+python-json-logger==0.1.11
+    # via patientsearch (setup.cfg)
+redis==3.5.3
+    # via
+    #   patientsearch (setup.cfg)
+    #   redis-dict
+redis-dict==1.5.2
+    # via patientsearch (setup.cfg)
+requests==2.26.0
+    # via patientsearch (setup.cfg)
+six==1.15.0
+    # via flask-jwt-extended
+urllib3==1.26.7
+    # via requests
+werkzeug==2.0.1
+    # via
+    #   flask
+    #   flask-jwt-extended