Merge pull request #1620 from neoformit/tpv-modify-alphafold

Tpv modify alphafold
usegalaxy-au · Nov 8, 2023 · ac31a71 · ac31a71
2 parents 513fe1d + 2b5315f
commit ac31a71
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml
@@ -779,19 +779,19 @@ tools:
   toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.1.*:
     inherits: toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/.*
     params:
-      docker_run_extra_arguments: --gpus all --env ALPHAFOLD_AA_LENGTH_MIN=16 --env
+      docker_run_extra_arguments: --gpus all --env ALPHAFOLD_AA_LENGTH_MIN=5 --env
         ALPHAFOLD_AA_LENGTH_MAX=3000 --env ALPHAFOLD_DB=/data/v2.1
   toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.3.*:
     inherits: toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/.*
     params:
-      docker_run_extra_arguments: --gpus all --env ALPHAFOLD_AA_LENGTH_MIN=16 --env
+      docker_run_extra_arguments: --gpus all --env ALPHAFOLD_AA_LENGTH_MIN=5 --env
         ALPHAFOLD_AA_LENGTH_MAX=3000 --env ALPHAFOLD_DB=/data/v2.3
     rules:
     - if: |
         min_version = '2.3.1+galaxy2'
         helpers.tool_version_gte(tool, min_version)
       params:
-        docker_run_extra_arguments: --gpus all --env ALPHAFOLD_AA_LENGTH_MIN=16 --env
+        docker_run_extra_arguments: --gpus all --env ALPHAFOLD_AA_LENGTH_MIN=5 --env
           ALPHAFOLD_AA_LENGTH_MAX=3000 --env ALPHAFOLD_DB=/data
   toolshed.g2.bx.psu.edu/repos/galaxy-australia/cactus_cactus/cactus_cactus/.*:
     context: