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Merge pull request #1638 from usegalaxy-au/cat-bro-patch-3
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more memory for all bedtools tools + run large fastqc jobs on slurm
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cat-bro authored Nov 17, 2023
2 parents 3e762c9 + 3abc107 commit 4e38e7d
Showing 1 changed file with 6 additions and 1 deletion.
Original file line number Diff line number Diff line change
Expand Up @@ -535,6 +535,11 @@ tools:
if: 0.01 <= input_size < 2
cores: 4
mem: 15.3
- id: fastqc_large_input_rule
if: input_size > 20
scheduling:
require:
- slurm
toolshed.g2.bx.psu.edu/repos/devteam/flanking_features/flanking_features_1/.*:
params:
singularity_enabled: true
Expand Down Expand Up @@ -1065,7 +1070,7 @@ tools:
if: input_size < 0.5
cores: 1
mem: 3.8
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_coveragebed/.*:
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools.*:
mem: 8
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/.*:
scheduling:
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