Add Hercules support (#1733)

* Update several RT files to add Hercules support. Add hercules intel lua file.

* Update rt.sh

* Use dusan's formatting in ufs_common. Change hdf5 version.

* Update rt_utils.sh

* Remove git diff syntax from rt_utils.sh

* Add regnerated cdeps_share files; add DCPRGNU and DCPRINTEL flags to CMEPS and CDEPS CMakeliststo allow for GNU builds; remove the Intel compiler directive in the current cdeps_share files.

* turn off control_wam_debug for intel as well

move CPRGNU CPP flag to apply to all gnu versions (fixes hera failures)

* Add Hercules as a machine in pull_request_template.md

.github/pull_request_template.md

@@ -76,6 +76,7 @@ PLEASE DO NOT MODIFY THE TEMPLATE BEYOND FILLING OUT THE PROPER SECTIONS -->
 - RDHPCS
   - [ ] Hera
   - [ ] Orion
+  - [ ] Hercules
   - [ ] Jet
   - [ ] Gaea
   - [ ] Cheyenne

CDEPS-interface/CMakeLists.txt

@@ -1,6 +1,8 @@
 # CDEPS compiler flags
 if(CMAKE_Fortran_COMPILER_ID MATCHES "GNU")
   set(CMAKE_Fortran_FLAGS "-g -fbacktrace -ffree-line-length-none")
+  #Set CPP defintions for the ufs/cdeps_share target library
+  list(APPEND CDEPS_SHARE_DEFS "CPRGNU")
   if(${CMAKE_Fortran_COMPILER_VERSION} VERSION_GREATER_EQUAL 10)
     set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -fallow-argument-mismatch -fallow-invalid-boz")
   endif()
@@ -11,6 +13,8 @@ elseif(CMAKE_Fortran_COMPILER_ID MATCHES "Intel")
   set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -O -assume realloc_lhs")
   set(CMAKE_Fortran_FLAGS_RELEASE "-O2 -fp-model precise")
   set(CMAKE_Fortran_FLAGS_DEBUG "-O0 -check -check noarg_temp_created -check nopointer -fpe0 -ftrapuv -init=snan,arrays")
+  #Set CPP defintions for the ufs/cdeps_share target library
+  list(APPEND CDEPS_SHARE_DEFS "CPRINTEL")
 else()
   message(WARNING "Fortran compiler with ID ${CMAKE_Fortran_COMPILER_ID} will be used with CMake default options")
 endif()
@@ -23,6 +27,7 @@ add_library(share OBJECT ${cdeps_share_files} ${ufs_cdeps_share_files})
 set_target_properties(share PROPERTIES Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod)
 target_include_directories(share PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/ufs/cdeps_share)
 target_include_directories(share PRIVATE $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/mod>)
+target_compile_definitions(share PRIVATE ${CDEPS_SHARE_DEFS})
 target_link_libraries(share PRIVATE esmf)
 
 # CDEPS/streams