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Update directory names for global workflow #899

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merged 8 commits into from
Feb 22, 2024
Merged

Update directory names for global workflow #899

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89bb1e1
Update FIX variables in the snow and ice blend scripts.
GeorgeGayno-NOAA Feb 16, 2024
4d4df62
Update FIX variables in global cycle scripts.
GeorgeGayno-NOAA Feb 16, 2024
0a5e76a
Remove other unused variables.
GeorgeGayno-NOAA Feb 20, 2024
97b765e
Remove unused variables OROFIX and FIX_SFC.
GeorgeGayno-NOAA Feb 21, 2024
733996b
Add new standard variable PACKAGEROOT.
GeorgeGayno-NOAA Feb 21, 2024
01f43b6
Add PACKAGEROOT to ./scripts/exemcsfc_global_sfc_prep.sh.
GeorgeGayno-NOAA Feb 21, 2024
a5a35db
Update prolog.
GeorgeGayno-NOAA Feb 21, 2024
7c8cb56
Merge branch 'develop' into feature/fixdirs
GeorgeGayno-NOAA Feb 21, 2024
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19 changes: 9 additions & 10 deletions scripts/exemcsfc_global_sfc_prep.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -72,7 +72,6 @@ RUN=${RUN:-"gfs"}
export HOMEgfs=${HOMEgfs:-$NWROOT/gfs.${gfs_ver:?}}
export USHgfs=${USHgfs:-$HOMEgfs/ush}
export FIXgfs=${FIXgfs:-$HOMEgfs/fix}
FIXgfs_am=${FIXgfs_am:-$HOMEgfs/fix/am}
export EXECgfs=${EXECgfs:-$HOMEgfs/exec}

# output com directory.
Expand Down Expand Up @@ -116,7 +115,7 @@ export IMS_FILE=${IMS_FILE:-"ims.grib2"}
export FIVE_MIN_ICE_FILE=${FIVE_MIN_ICE_FILE:-"seaice.5min.grib2"}

# landmask file for global 5-minute data (grib 2)
export FIVE_MIN_ICE_MASK_FILE=${FIVE_MIN_ICE_MASK_FILE:-${FIXgfs_am}/emcsfc_gland5min.grib2}
export FIVE_MIN_ICE_MASK_FILE=${FIVE_MIN_ICE_MASK_FILE:-${FIXgfs}/am/emcsfc_gland5min.grib2}

# the output ice blend data (grib)
export BLENDED_ICE_FILE=${BLENDED_ICE_FILE:-seaice.5min.blend}
Expand Down Expand Up @@ -182,10 +181,10 @@ LATB=${LATB:-"1536"}

resolution="${JCAP}.${LONB}.${LATB}"

export MODEL_SLMASK_FILE=${SLMASK:-$FIXgfs_am/global_slmask.t${resolution}.grb}
export MODEL_LATITUDE_FILE=${MDL_LATS:-$FIXgfs_am/global_latitudes.t${resolution}.grb}
export MODEL_LONGITUDE_FILE=${MDL_LONS:-$FIXgfs_am/global_longitudes.t${resolution}.grb}
export GFS_LONSPERLAT_FILE=${LONSPERLAT:-$FIXgfs_am/global_lonsperlat.t${resolution}.txt}
export MODEL_SLMASK_FILE=${SLMASK:-${FIXgfs}/am/global_slmask.t${resolution}.grb}
export MODEL_LATITUDE_FILE=${MDL_LATS:-${FIXgfs}/am/global_latitudes.t${resolution}.grb}
export MODEL_LONGITUDE_FILE=${MDL_LONS:-${FIXgfs}/am/global_longitudes.t${resolution}.grb}
export GFS_LONSPERLAT_FILE=${LONSPERLAT:-${FIXgfs}/am/global_lonsperlat.t${resolution}.txt}
export MODEL_SNOW_FILE=${FNSNOAJCAP:-${RUN}.${cycle}.snogrb_t${resolution}}
export MODEL_SNOW_FILE_m6hrs=${FNSNOGJCAP:-${COMINgfs_m6hrs}/${RUN}.${cycle_m6hrs}.snogrb_t${resolution}}

Expand Down Expand Up @@ -240,10 +239,10 @@ LATB_ENKF=${LATB_ENKF:-"576"}

resolution="${JCAP_ENKF}.${LONB_ENKF}.${LATB_ENKF}"

export MODEL_SLMASK_FILE=${SLMASK_ENKF:-$FIXgfs_am/global_slmask.t${resolution}.grb}
export MODEL_LATITUDE_FILE=${MDL_LATS_ENKF:-$FIXgfs_am/global_latitudes.t${resolution}.grb}
export MODEL_LONGITUDE_FILE=${MDL_LONS_ENKF:-$FIXgfs_am/global_longitudes.t${resolution}.grb}
export GFS_LONSPERLAT_FILE=${LONSPERLAT_ENKF:-$FIXgfs_am/global_lonsperlat.t${resolution}.txt}
export MODEL_SLMASK_FILE=${SLMASK_ENKF:-${FIXgfs}/am/global_slmask.t${resolution}.grb}
export MODEL_LATITUDE_FILE=${MDL_LATS_ENKF:-${FIXgfs}/am/global_latitudes.t${resolution}.grb}
export MODEL_LONGITUDE_FILE=${MDL_LONS_ENKF:-${FIXgfs}/am/global_longitudes.t${resolution}.grb}
export GFS_LONSPERLAT_FILE=${LONSPERLAT_ENKF:-${FIXgfs}/am/global_lonsperlat.t${resolution}.txt}
export MODEL_SNOW_FILE=${FNSNOAJCAP_ENKF:-${RUN}.${cycle}.snogrb_t${resolution}}
export MODEL_SNOW_FILE_m6hrs=${FNSNOGJCAP_ENKF:-${COMINgfs_m6hrs}/${RUN}.${cycle_m6hrs}.snogrb_t${resolution}}

Expand Down
9 changes: 4 additions & 5 deletions ush/emcsfc_ice_blend.sh
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Expand Up @@ -79,19 +79,18 @@ cd $DATA
SENDCOM=${SENDCOM:-"NO"}

envir=${envir:-"prod"}
NWROOT=${NWROOT:-"/nw${envir}"}

HOMEgfs=${HOMEgfs:-${NWPROD:-$NWROOT/gfs.${gfs_ver:?}}}
FIXam=${FIXam:-$HOMEgfs/fix/am}
HOMEgfs=${HOMEgfs:-/nw${envir}/gfs.${gfs_ver:?}}
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EXECgfs=${EXECgfs:-$HOMEgfs/exec}

FIXgfs=${FIXgfs:-$HOMEgfs/fix}

# output com directory.
COMOUT=${COMOUT:-$PWD}

# the input data. ims may be grib1 or grib2. five_min files are grib 2.
IMS_FILE=${IMS_FILE:-"ims.grib2"}
FIVE_MIN_ICE_FILE=${FIVE_MIN_ICE_FILE:-"seaice.5min.grib2"}
FIVE_MIN_ICE_MASK_FILE=${FIVE_MIN_ICE_MASK_FILE:-${FIXam}/emcsfc_gland5min.grib2}
FIVE_MIN_ICE_MASK_FILE=${FIVE_MIN_ICE_MASK_FILE:-${FIXgfs}/am/emcsfc_gland5min.grib2}

# the output ice blend data (grib)
BLENDED_ICE_FILE=${BLENDED_ICE_FILE:-seaice.5min.blend}
Expand Down
7 changes: 3 additions & 4 deletions ush/emcsfc_snow.sh
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Expand Up @@ -74,10 +74,9 @@ fi
#------------------------------------------------------------------------

envir=${envir:-"prod"}
NWROOT=${NWROOT:-"/nw${envir}"}
HOMEgfs=${HOMEgfs:-$NWROOT/gfs.${gfs_ver:?}}
HOMEgfs=${HOMEgfs:-/nw${envir}/gfs.${gfs_ver:?}}
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EXECgfs=${EXECgfs:-$HOMEgfs/exec}
FIXam=${FIXam:-$HOMEgfs/fix/am}
FIXgfs=${FIXgfs:-$HOMEgfs/fix}

COMOUT=${COMOUT:-$PWD}

Expand Down Expand Up @@ -114,7 +113,7 @@ IMS_FILE=${IMS_FILE:-"imssnow96.grb.grib2"}
# File of snow cover climo used to qc the input snow data
#------------------------------------------------------------------------

CLIMO_QC=${CLIMO_QC:-${FIXam}/emcsfc_snow_cover_climo.grib2}
CLIMO_QC=${CLIMO_QC:-${FIXgfs}/am/emcsfc_snow_cover_climo.grib2}

#------------------------------------------------------------------------
# Output snow analysis on model grid
Expand Down
81 changes: 39 additions & 42 deletions ush/global_cycle.sh
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Expand Up @@ -18,22 +18,20 @@
#
# Imported Shell Variables:
# CASE Model resolution. Defaults to C768.
# JCAP Spectral truncation of the global fixed climatology files
# JCAP_CASE Spectral truncation of the global fixed climatology files
# (such as albedo), which are on the old GFS gaussian grid.
# Computed from CASE by default.
# LATB i-dimension of the global climatology files. NOT the
# LATB_CASE i-dimension of the global climatology files. NOT the
# i-dimension of the model grid. Computed from CASE by default.
# LONB j-dimension of the global climatology files. NOT the
# LONB_CASE j-dimension of the global climatology files. NOT the
# j-dimension of the model grid. Computed from CASE by default.
# BASEDIR Root directory where all scripts and fixed files reside.
# Default is /nwprod2.
# OCNRES Ocean grid resolution. '100' is one degree.
# HOMEgfs Directory for gfs. Default is
# $BASEDIR/gfs.v15.0.0.
# FIX_DIR Directory for fixed data. Default is $HOMEgfs/fix.
# FIXam Directory for the global fixed climatology files.
# Defaults to $FIX_DIR/am
# nwprod/gfs.v15.0.0.
# envir Environment - i.e., 'prod' or 'para'. Default is 'prod'.
# FIXgfs Directory for fixed data. Default is $HOMEgfs/fix.
# OROFIX Directory for model orography data. Default is
# $FIX_DIR/orog/${CASE}
# $FIXgfs/orog/${CASE}
# FIX_SFC Directory for model surface climatological data.
# Default is $OROFIX/sfc.
# EXECgfs Directory of the program executable. Defaults to
Expand All @@ -55,46 +53,46 @@
# CYCLEXEC Program executable.
# Defaults to ${EXECgfs}/global_cycle$XC
# FNGLAC Input glacier climatology GRIB file.
# Defaults to ${FIXam}/global_glacier.2x2.grb
# Defaults to ${FIXgfs}/am/global_glacier.2x2.grb
# FNMXIC Input maximum sea ice climatology GRIB file.
# Defaults to ${FIXam}/global_maxice.2x2.grb
# Defaults to ${FIXgfs}/am/global_maxice.2x2.grb
# FNTSFC Input SST climatology GRIB file.
# Defaults to ${FIXam}/RTGSST.1982.2012.monthly.clim.grb
# Defaults to ${FIXgfs}/am/RTGSST.1982.2012.monthly.clim.grb
# FNSALC Input Salinity climatology netcdf file.
# Defaults to ${FIXam}/global_salclm.t1534.3072.1536.nc
# Defaults to ${FIXgfs}/am/global_salclm.t1534.3072.1536.nc
# FNSNOC Input snow climatology GRIB file.
# Defaults to ${FIXam}/global_snoclim.1.875.grb
# Defaults to ${FIXgfs}/am/global_snoclim.1.875.grb
# FNZORC Input roughness climatology.
# Defaults to igbp vegetation type-based lookup table
# FNVETC must be set to igbp file:
# ${FIXam}/global_vegtype.igbp.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.rg.grb
# FNALBC Input 4-component albedo climatology GRIB file.
# defaults to ${FIXam}/global_snowfree_albedo.bosu.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.rg.grb
# defaults to ${FIX_SFC}/${CASE}.mx${OCNRES}.snowfree_albedo.tileX.nc
# FNALBC2 Input 'facsf' and 'facwf' albedo climatology GRIB file.
# Defaults to ${FIXam}/global_albedo4.1x1.grb
# Defaults to ${FIX_SFC}/${CASE}.mx${OCNRES}.facsf.tileX.nc
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# FNAISC Input sea ice climatology GRIB file.
# Defaults to ${FIXam}/IMS-NIC.blended.ice.monthly.clim.grb
# Defaults to ${FIXgfs}/am/IMS-NIC.blended.ice.monthly.clim.grb
# FNTG3C Input deep soil temperature climatology GRIB file.
# Defaults to ${FIXam}/global_tg3clim.2.6x1.5.grb
# Defaults to ${FIX_SFC}/${CASE}.mx${OCNRES}.substrate_temperature.tileX.nc
# FNVEGC Input vegetation fraction climatology GRIB file.
# Defaults to ${FIXam}/global_vegfrac.0.144.decpercent.grb
# Defaults to ${FIX_SFC}/${CASE}.mx${OCNRES}.vegetation_greenness.tileX.nc
# FNVETC Input vegetation type climatology GRIB file.
# Defaults to ${FIXam}/global_vegtype.igbp.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.rg.grb
# Defaults to ${FIX_SFC}/${CASE}.mx${OCNRES}.vegetation_type.tileX.nc
# FNSOTC Input soil type climatology GRIB file.
# Defaults to ${FIXam}/global_soiltype.statsgo.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.rg.grb
# Defaults to ${FIX_SFC}/${CASE}.mx${OCNRES}.soil_type.tileX.nc
# FNSMCC Input soil moisture climatology GRIB file.
# Defaults to ${FIXam}/global_soilmgldas.statsgo.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.grb
# Defaults to ${FIXgfs}/am/global_soilmgldas.statsgo.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.grb
# FNVMNC Input min veg frac climatology GRIB file.
# Defaults to ${FIXam}/global_shdmin.0.144x0.144.grb
# Defaults to ${FIX_SFC}/${CASE}.mx${OCNRES}.vegetation_greenness.tileX.nc
# FNVMXC Input max veg frac climatology GRIB file.
# Defaults to ${FIXam}/global_shdmax.0.144x0.144.grb
# Defaults to ${FIX_SFC}/${CASE}.mx${OCNRES}.vegetation_greenness.tileX.nc
# FNSLPC Input slope type climatology GRIB file.
# Defaults to ${FIXam}/global_slope.1x1.grb
# Defaults to ${FIX_SFC}/${CASE}.mx${OCNRES}.slope_type.tileX.nc
# FNABSC Input max snow albedo climatology GRIB file.
# Defaults to ${FIXam}/global_mxsnoalb.uariz.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.rg.grb
# Defaults to ${FIX_SFC}/${CASE}.mx${OCNRES}.maximum_snow_albedo.tileX.nc
# FNMSKH Input high resolution land mask GRIB file. Use to set mask for
# some of the input climatology fields. This is NOT the model mask.
# Defaults to ${FIXam}/seaice_newland.grb
# Defaults to ${FIXgfs}/am/global_slmask.t1534.3072.1536.grb
# NST_FILE GSI file on the gaussian grid containing NST increments.
# Defaults to NULL (no file).
# FNTSFA Input SST analysis GRIB file.
Expand Down Expand Up @@ -233,12 +231,11 @@ OCNRES=${OCNRES:-100}

# Directories.
gfs_ver=${gfs_ver:-v15.0.0}
BASEDIR=${BASEDIR:-${NWROOT:-/nwprod2}}
HOMEgfs=${HOMEgfs:-$BASEDIR/gfs_ver.${gfs_ver}}
envir=${envir:-prod}
HOMEgfs=${HOMEgfs:-/nw${envir}/gfs_ver.${gfs_ver}}
EXECgfs=${EXECgfs:-$HOMEgfs/exec}
FIX_DIR=${FIX_DIR:-$HOMEgfs/fix}
FIXam=${FIXam:-$FIX_DIR/am}
OROFIX=${OROFIX:-$FIX_DIR/orog/${CASE}}
FIXgfs=${FIXgfs:-$HOMEgfs/fix}
OROFIX=${OROFIX:-$FIXgfs/orog/${CASE}}
FIX_SFC=${FIX_SFC:-$OROFIX/sfc}
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DATA=${DATA:-$(pwd)}
COMIN=${COMIN:-$(pwd)}
Expand Down Expand Up @@ -278,14 +275,14 @@ zsea2=${zsea2:-0}
MAX_TASKS_CY=${MAX_TASKS_CY:-99999}
FRAC_GRID=${FRAC_GRID:-.false.}

FNGLAC=${FNGLAC:-${FIXam}/global_glacier.2x2.grb}
FNMXIC=${FNMXIC:-${FIXam}/global_maxice.2x2.grb}
FNTSFC=${FNTSFC:-${FIXam}/RTGSST.1982.2012.monthly.clim.grb}
FNSALC=${FNSALC:-${FIXam}/global_salclm.t1534.3072.1536.nc}
FNSNOC=${FNSNOC:-${FIXam}/global_snoclim.1.875.grb}
FNGLAC=${FNGLAC:-${FIXgfs}/am/global_glacier.2x2.grb}
FNMXIC=${FNMXIC:-${FIXgfs}/am/global_maxice.2x2.grb}
FNTSFC=${FNTSFC:-${FIXgfs}/am/RTGSST.1982.2012.monthly.clim.grb}
FNSALC=${FNSALC:-${FIXgfs}/am/global_salclm.t1534.3072.1536.nc}
FNSNOC=${FNSNOC:-${FIXgfs}/am/global_snoclim.1.875.grb}
FNZORC=${FNZORC:-igbp}
FNAISC=${FNAISC:-${FIXam}/IMS-NIC.blended.ice.monthly.clim.grb}
FNSMCC=${FNSMCC:-${FIXam}/global_soilmgldas.statsgo.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.grb}
FNAISC=${FNAISC:-${FIXgfs}/am/IMS-NIC.blended.ice.monthly.clim.grb}
FNSMCC=${FNSMCC:-${FIXgfs}/am/global_soilmgldas.statsgo.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.grb}
FNALBC2=${FNALBC2:-${FIX_SFC}/${CASE}.mx${OCNRES}.facsf.tileX.nc}
FNTG3C=${FNTG3C:-${FIX_SFC}/${CASE}.mx${OCNRES}.substrate_temperature.tileX.nc}
FNVEGC=${FNVEGC:-${FIX_SFC}/${CASE}.mx${OCNRES}.vegetation_greenness.tileX.nc}
Expand All @@ -296,7 +293,7 @@ FNABSC=${FNABSC:-${FIX_SFC}/${CASE}.mx${OCNRES}.maximum_snow_albedo.tileX.nc}
FNVMNC=${FNVMNC:-${FIX_SFC}/${CASE}.mx${OCNRES}.vegetation_greenness.tileX.nc}
FNVMXC=${FNVMXC:-${FIX_SFC}/${CASE}.mx${OCNRES}.vegetation_greenness.tileX.nc}
FNSLPC=${FNSLPC:-${FIX_SFC}/${CASE}.mx${OCNRES}.slope_type.tileX.nc}
FNMSKH=${FNMSKH:-${FIXam}/global_slmask.t1534.3072.1536.grb}
FNMSKH=${FNMSKH:-${FIXgfs}/am/global_slmask.t1534.3072.1536.grb}
NST_FILE=${NST_FILE:-"NULL"}
LND_SOI_FILE=${LND_SOI_FILE:-"NULL"}
FNTSFA=${FNTSFA:-${COMIN}/${PREINP}sstgrb${SUFINP}}
Expand Down Expand Up @@ -330,7 +327,7 @@ ln -fs $FNTSFC sstclm
ln -fs $FNSALC salclm

# If the appropriate resolution fix file is not present, use the highest resolution available (T1534)
[[ ! -f $FNSMCC ]] && FNSMCC="$FIXam/global_soilmgldas.statsgo.t1534.3072.1536.grb"
[[ ! -f $FNSMCC ]] && FNSMCC="$FIXgfs/am/global_soilmgldas.statsgo.t1534.3072.1536.grb"

################################################################################
# Make surface analysis
Expand Down
12 changes: 6 additions & 6 deletions ush/global_cycle_driver.sh
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Expand Up @@ -15,12 +15,12 @@ export CDUMP=${CDUMP:-gfs} # gfs or gdas
export COMPONENT=${COMPONENT:-atmos}

pwd=$(pwd)
export NWPROD=${NWPROD:-$pwd}
export DMPDIR=${DMPDIR:-$NWPROD}
export HOMEgfs=${HOMEgfs:-$NWPROD/gfs.v15.0.0}
export FIX_DIR=${FIX_DIR:-$HOMEgfs/fix}
export FIXam=${FIXam:-$FIX_DIR/am}
export OROFIX=${OROFIX:-$FIX_DIR/orog/${CASE}}
export DMPDIR=${DMPDIR:-$pwd}
export envir=${envir:-prod}
export gfs_ver=${gfs_ver:-v15.0.0}
export HOMEgfs=${HOMEgfs:-/nw${envir}/gfs.${gfs_ver}}
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export FIXgfs=${FIXgfs:-$HOMEgfs/fix}
export OROFIX=${OROFIX:-$FIXgfs/orog/${CASE}}
export FIX_SFC=${FIX_SFC:-$OROFIX/sfc}
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ntiles=${ntiles:-6}
Expand Down
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