Merge pull request #263 from tuva-health/ed-encounter-creation

Creating Emergency Department Encounters

dbt_project.yml

@@ -9,9 +9,6 @@ profile: default
 vars:
 
     ## CCSR data mart vars
-    # These vars enable the wide tables - disabling will exclude wide tables from dbt runs
-    wide_condition_enabled: True
-    wide_procedure_enabled: True
 
     # Set to "ip" for inpatient data or "op" for outpatient data (More info in the README)
     record_type: "ip"

integration_tests/dbt_project.yml

@@ -13,7 +13,7 @@ vars:
   ## Update these vars to use your own data as input, do not comment out
   # enabled logic has been added to the sources config
   input_database: tuva
-  input_schema: tuva_claims
+  input_schema: _tuva_claims
 
   tuva_last_run: '{{ run_started_at.astimezone(modules.pytz.timezone("UTC")) }}'
 
@@ -28,17 +28,25 @@ vars:
   ## The vars directly below enable a single data mart.  See the Quickstart
   # guide for instructions.
 
-  # ccsr_enabled: true
-  # cms_chronic_conditions_enabled: true
-  # tuva_chronic_conditions_enabled: true
+  # ccsr_enabled: false
+  # cms_chronic_conditions_enabled: false
+  # tuva_chronic_conditions_enabled: false
   # claims_preprocessing_enabled: true
-  # cms_hcc_enabled: true
-  # ed_classification_enabled: true
-  # financial_pmpm_enabled: true
-  # quality_measures_enabled: true
-  # readmissions_enabled: true
+  # cms_hcc_enabled: false
+  # ed_classification_enabled: false
+  # financial_pmpm_enabled: false
+  # insights_enabled: false
+  # quality_measures_enabled: false
+  # readmissions_enabled: false
 
 
+  ## CMS HCC data mart vars
+  # The payment_year variable has a default of the current year
+  cms_hcc_payment_year: 2023
+
+  # DO NOT CHANGE - Future logic to be added for selecting different HCC model versions
+  cms_hcc_model_version: CMS-HCC-V24
+
 model-paths: ["models"]
 analysis-paths: ["analyses"]
 test-paths: ["tests"]

integration_tests/docs_generate/models/eligibility.sql

@@ -20,4 +20,4 @@ select patient_id,
        zip_code,
        phone,
        data_source
-from tuva._tuva_synthetic.eligibility_seed
+from tuva._tuva_synthetic.eligibility_seed

integration_tests/docs_generate/models/encounter.sql

@@ -13,6 +13,7 @@ null as encounter_id
 , null as discharge_disposition_description
 , null as attending_provider_id
 , null as facility_npi
+, null as primary_diagnosis_code_type
 , null as primary_diagnosis_code
 , null as primary_diagnosis_description
 , null as ms_drg_code

models/ccsr/ccsr_models.yml

@@ -132,40 +132,6 @@ models:
       - name: tuva_last_run
         description: The time at with the model was materialized. Generated by `dbt_utils.pretty_time` as the local time of the `dbt run` environment.  Timezone is configurable via the `tuva_last_run` var.
 
-
-  - name: ccsr__wide_condition_category
-    config:
-      schema: |
-        {%- if var('tuva_schema_prefix',None) != None -%}{{var('tuva_schema_prefix')}}_ccsr
-        {% else %}ccsr{%- endif -%}
-      alias: wide_condition_category
-      tags:
-        - ccsr
-      materialized: table
-      enabled: "{{var('wide_condition_enabled', True)}}"
-    description: |  
-      This model contains a row for each input record with a column for every CCSR condition category. 
-      Each column contains a value of 0, 1, 2, or 3. These values indicate:
-        * 0 \- The CCSR was not triggered by any ICD-10-CM diagnosis code on the input record.
-        * 1 \- The CCSR was triggered by only the principal (or first-listed) diagnosis on the input record.
-        * 2 \- The CCSR was triggered by both the principal (or first-listed) diagnosis and any secondary diagnosis on the input record.
-        * 3 \- The CCSR was triggered by only secondary diagnosis code(s) on the input record.
-
-        This table doesn't include any category descriptions, but category and parent category descriptions
-        can be found by querying the target column name against the `ccsr__dx_vertical_pivot` intermediate model. 
-    columns:
-      - name: encounter_id
-        description: Unique identifier for an encounter.
-      - name: claim_id
-        description: Unique claim_id for each claim.
-      - name: patient_id
-        description: Unique identifier for each patient.
-      - name: dxccsr_version
-        description: The version number of the CCSR program from which the dbt model was derived.
-      - name: tuva_last_run
-        description: The time at with the model was materialized. Generated by `dbt_utils.pretty_time` as the local time of the `dbt run` environment.  Timezone is configurable via the `tuva_last_run` var.
-
-
   - name: ccsr__singular_condition_category
     config:
       schema: |
@@ -246,37 +212,6 @@ models:
         description: The time at with the model was materialized. Generated by `dbt_utils.pretty_time` as the local time of the `dbt run` environment.  Timezone is configurable via the `tuva_last_run` var.
 
 
-  - name: ccsr__wide_procedure_category
-    config:
-      schema: |
-        {%- if var('tuva_schema_prefix',None) != None -%}{{var('tuva_schema_prefix')}}_ccsr
-        {% else %}ccsr{%- endif -%}
-      alias: wide_procedure_category
-      tags:
-        - ccsr
-      materialized: table
-      enabled: "{{var('wide_procedure_enabled', True)}}"
-    description: |  
-      This model contains a row for each input record with a column for every CCSR procedure category. 
-      Each column contains a value of 0 or 1. These values indicate:
-        * 0 \- The CCSR was not triggered by any ICD-10-PCS code on the input record.
-        * 1 \- The CCSR was triggered by a procedure on the input record.  
-      
-      While the CCSR maps to values 0-3, these values require a procedure rank, but no rank is
-      included in the TUVA procedure model.
-
-      This table doesn't include any category descriptions, but category and parent category descriptions
-      can be found by querying the target column name against the `ccsr_procedure_category_map` intermediate model. 
-    columns:
-      - name: encounter_id
-        description: The encounter_id for the encounter where this procedure was performed.
-      - name: patient_id
-        description: Unique identifier for each patient.
-      - name: prccsr_version
-        description: The version number of the CCSR program from which the dbt model was derived.
-      - name: tuva_last_run
-        description: The time at with the model was materialized. Generated by `dbt_utils.pretty_time` as the local time of the `dbt run` environment.  Timezone is configurable via the `tuva_last_run` var.
-
 ## Staging
 
   - name: ccsr__stg_core__condition