update all dataset url with correct current information; work on gene…

…ontology#804

metadata/datasets/aspgd.yaml

@@ -7,17 +7,17 @@ project_url: "http://aspergillusgenomes.org/"
 funding_source: "NIAID US NIH"
 email_report: "[email protected]"
 datasets:
- -    
+ -
    id: aspgd.gaf
    label: "aspgd gaf file"
    description: "gaf file for aspgd from Aspergillus Genome Database"
-   url: http://geneontology.org/gene-associations/gene_association.aspgd.gz
+   url: http://current.geneontology.org/annotations/aspgd.gaf.gz
    type: gaf
    dataset: aspgd
    submitter: aspgd
    compression: gzip
    source: http://geneontology.org/gene-associations/submission/gene_association.aspgd.gz
-   entity_type: 
+   entity_type:
    status: active
    species_code: Aspergillus
    taxa:
@@ -43,4 +43,3 @@ datasets:
     - NCBITaxon:767770
     - NCBITaxon:162425
     - NCBITaxon:5085
-

metadata/datasets/cgd.yaml

@@ -7,19 +7,19 @@ project_url: "http://www.candidagenome.org/"
 funding_source: "NIDCR at US NIH, grant number 1-R01-DE015873-01"
 email_report: "[email protected]"
 datasets:
- -    
+ -
    id: cgd.gaf
    label: "cgd gaf file"
    description: "gaf file for cgd from Candida Genome Database"
-   url: http://geneontology.org/gene-associations/gene_association.cgd.gz
+   url: http://current.geneontology.org/annotations/cgd.gaf.gz
    type: gaf
    dataset: cgd
    submitter: cgd
    compression: gzip
    source: http://geneontology.org/gene-associations/submission/gene_association.cgd.gz
-   entity_type: 
+   entity_type:
    status: active
-   species_code: 
+   species_code:
    taxa:
     - NCBITaxon:5476
     - NCBITaxon:5478
@@ -32,4 +32,3 @@ datasets:
     - NCBITaxon:306902
     - NCBITaxon:379508
     - NCBITaxon:42374
-

metadata/datasets/dictybase.yaml

@@ -11,7 +11,7 @@ datasets:
    id: dictybase.gpa
    label: "dictybase gpad file"
    description: "gpad file for dictyBase from dictyBase"
-   url: http://geneontology.org/gpad-gpi/release/dictyBase.gpa.gz
+   url: http://current.geneontology.org/annotations/dictybase.gpad.gz
    type: gpad
    dataset: dictybase
    submitter: dictybase
@@ -29,7 +29,7 @@ datasets:
    id: dictybase.gpi
    label: "dictybase gpi file"
    description: "gpi file for dictyBase from dictyBase"
-   url: http://geneontology.org/gpad-gpi/release/dictyBase.gpi.gz
+   url: http://current.geneontology.org/annotations/dictybase.gpi.gz
    type: gpi
    dataset: dictybase
    submitter: dictybase
@@ -47,7 +47,7 @@ datasets:
    id: dictybase.gaf
    label: "dictybase gaf file"
    description: "gaf file for dictybase from dictyBase"
-   url: http://geneontology.org/gene-associations/dictyBase.gaf.gz
+   url: http://current.geneontology.org/annotations/dictybase.gaf.gz
    type: gaf
    dataset: dictybase
    submitter: dictybase
@@ -61,4 +61,3 @@ datasets:
     - NCBITaxon:366501
     - NCBITaxon:44689
     - NCBITaxon:5782
-

metadata/datasets/ecocyc.yaml

@@ -7,19 +7,18 @@ project_url: "http://ecoliwiki.net"
 funding_source: "GM077678, NIGMS U24GM088849"
 email_report: "[email protected]"
 datasets:
- -    
+ -
    id: ecocyc.gaf
    label: "ecocyc gaf file"
    description: "gaf file for ecocyc from Encyclopedia of E. coli metabolism"
-   url: http://geneontology.org/gene-associations/gene_association.ecocyc.gz
+   url: http://current.geneontology.org/annotations/ecocyc.gaf.gz
    type: gaf
    dataset: ecocyc
    submitter: ecocyc
    compression: gzip
    source: http://geneontology.org/gene-associations/submission/gene_association.ecocyc.gz
-   entity_type: 
+   entity_type:
    status: active
-   species_code: 
+   species_code:
    taxa:
     - NCBITaxon:83333
-

metadata/datasets/fb.yaml

@@ -7,19 +7,18 @@ project_url: "http://flybase.org"
 funding_source: "MRC at UK MRC, grant number G1000968 "
 email_report: "[email protected]"
 datasets:
- -    
+ -
    id: fb.gaf
    label: "fb gaf file"
    description: "gaf file for fb from FlyBase"
-   url: http://geneontology.org/gene-associations/gene_association.fb.gz
+   url: http://current.geneontology.org/annotations/fb.gaf.gz
    type: gaf
    dataset: fb
    submitter: fb
    compression: gzip
    source: http://geneontology.org/gene-associations/submission/gene_association.fb.gz
-   entity_type: 
+   entity_type:
    status: active
    species_code: Dmel
    taxa:
     - NCBITaxon:7227
-

metadata/datasets/genedb.yaml

@@ -7,50 +7,50 @@ project_url: "http://www.genedb.org/leish"
 funding_source: "unspecified"
 email_report: "[email protected],[email protected]"
 datasets:
- -    
+ -
    id: genedb_lmajor.gaf
    label: "genedb_lmajor gaf file"
    description: "gaf file for genedb_lmajor from GeneDB"
-   url: http://geneontology.org/gene-associations/gene_association.GeneDB_Lmajor.gz
+   url: http://current.geneontology.org/annotations/genedb_lmajor.gaf.gz
    type: gaf
    dataset: genedb_lmajor
    submitter: genedb
    compression: gzip
    source: ftp://ftp.sanger.ac.uk/pub/project/pathogens/as44/Lmajor.gaf.gz
-   entity_type: 
+   entity_type:
    status: active
-   species_code: 
+   species_code:
    taxa:
     - NCBITaxon:5664
 
- -    
+ -
    id: genedb_pfalciparum.gaf
    label: "genedb_pfalciparum gaf file"
    description: "gaf file for genedb_pfalciparum from GeneDB"
-   url: http://geneontology.org/gene-associations/gene_association.GeneDB_Pfalciparum.gz
+   url: http://current.geneontology.org/annotations/genedb_pfalciparum.gaf.gz
    type: gaf
    dataset: genedb_pfalciparum
    submitter: genedb
    compression: gzip
    source: http://geneontology.org/gene-associations/submission/gene_association.GeneDB_Pfalciparum.gz
-   entity_type: 
+   entity_type:
    status: active
-   species_code: 
+   species_code:
    taxa:
     - NCBITaxon:5833
 
- -    
+ -
    id: genedb_tbrucei.gaf
    label: "genedb_tbrucei gaf file"
    description: "gaf file for genedb_tbrucei from GeneDB"
-   url: http://geneontology.org/gene-associations/gene_association.GeneDB_Tbrucei.gz
+   url: http://current.geneontology.org/annotations/genedb_tbrucei.gaf.gz
    type: gaf
    dataset: genedb_tbrucei
    submitter: genedb
    compression: gzip
    source: ftp://ftp.sanger.ac.uk/pub/project/pathogens/as44/Tbruceibrucei927.gaf.gz
-   entity_type: 
+   entity_type:
    status: active
-   species_code: 
+   species_code:
    taxa:
     - NCBITaxon:185431