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Merge pull request #193 from benjeffery/fix-build6
Fix build for theme breaking change
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -11,7 +11,7 @@ on: | |
| jobs: | ||
| cancel-superseded: | ||
| name: Cancel superseded | ||
| runs-on: ubuntu-20.04 | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Cancel Previous Runs | ||
| uses: styfle/[email protected] | ||
|
|
@@ -77,7 +77,7 @@ jobs: | |
| build-msprime-docs: | ||
| name: Build msprime docs | ||
| needs: cancel-superseded | ||
| runs-on: ubuntu-20.04 | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| name: Checkout msprime | ||
|
|
@@ -120,7 +120,7 @@ jobs: | |
| if: steps.docs-cache.outputs.cache-hit != 'true' | ||
| run: venv-latest/bin/activate && make | ||
|
|
||
| - name: Build Docs | ||
| - name: Build Latest Docs | ||
| if: steps.docs-cache.outputs.cache-hit != 'true' | ||
| run: | | ||
| venv-latest/bin/activate | ||
|
|
@@ -158,12 +158,14 @@ jobs: | |
| # run: venv-stable/bin/activate && make | ||
| run: venv-latest/bin/activate && make | ||
|
|
||
| - name: Build Docs | ||
| - name: Build Stable Docs | ||
| if: steps.docs-cache.outputs.cache-hit != 'true' | ||
| run: | | ||
| rm -rf docs/_build | ||
| venv-latest/bin/activate | ||
| cd docs | ||
| # A sphinx-book-theme breaking change needs this | ||
| sed -i '/html_theme_options:/a\ \ \ \ \ navigation_with_keys: False' _config.yml | ||
| make dist | ||
| # make dist changes the _conf.yml file to write the version number, so drop the change | ||
| git checkout . | ||
|
|
@@ -197,7 +199,7 @@ jobs: | |
| build-tsinfer-docs: | ||
| name: Build tsinfer docs | ||
| needs: cancel-superseded | ||
| runs-on: ubuntu-20.04 | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| name: Checkout tsinfer | ||
|
|
@@ -236,7 +238,7 @@ jobs: | |
| if: steps.docs-cache.outputs.cache-hit != 'true' | ||
| run: venv-latest/bin/activate && make | ||
|
|
||
| - name: Build Docs | ||
| - name: Build Latest Docs | ||
| if: steps.docs-cache.outputs.cache-hit != 'true' | ||
| run: | | ||
| venv-latest/bin/activate | ||
|
|
@@ -263,7 +265,7 @@ jobs: | |
| # if: steps.docs-cache.outputs.cache-hit != 'true' | ||
| # name: Setup Python | ||
| # with: | ||
| # python-version: "3.8" | ||
| # python-version: "3.10" | ||
| # | ||
| # - name: Build virtualenv | ||
| # if: steps.docs-cache.outputs.cache-hit != 'true' | ||
|
|
@@ -286,15 +288,21 @@ jobs: | |
| venv-latest/bin/activate && python -c "import numpy;print(numpy.__file__)" | ||
| venv-latest/bin/activate && make | ||
| - name: Build Docs | ||
| - name: Build Stable Docs | ||
| if: steps.docs-cache.outputs.cache-hit != 'true' | ||
| run: | | ||
| rm -rf docs/_build | ||
| #venv-stable/bin/activate | ||
| venv-latest/bin/activate | ||
| cd docs | ||
| # A sphinx-book-theme breaking change needs this | ||
| sed -i '/html_theme_options:/a\ \ \ \ \ navigation_with_keys: False' _config.yml | ||
| # Use the new theme for old docs | ||
| sed -i 's/html_theme: tskit_book_theme/html_theme: sphinx_book_theme/g' _config.yml | ||
| sed -i 's/pygment_light_style: monokai//g' _config.yml | ||
| make dist | ||
| # make dist changes the _conf.yml file to write the version number, so drop the change | ||
| git checkout . | ||
|
|
@@ -314,7 +322,7 @@ jobs: | |
| build-tskit-docs: | ||
| name: Build tskit docs | ||
| needs: cancel-superseded | ||
| runs-on: ubuntu-20.04 | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| name: Checkout tskit | ||
|
|
@@ -354,7 +362,7 @@ jobs: | |
| if: steps.docs-cache.outputs.cache-hit != 'true' | ||
| run: venv-latest/bin/activate && make -C python | ||
|
|
||
| - name: Build Docs | ||
| - name: Build Latest Docs | ||
| if: steps.docs-cache.outputs.cache-hit != 'true' | ||
| run: | | ||
| venv-latest/bin/activate | ||
|
|
@@ -380,7 +388,7 @@ jobs: | |
| if: steps.docs-cache.outputs.cache-hit != 'true' | ||
| name: Setup Python | ||
| with: | ||
| python-version: 3.8 | ||
| python-version: "3.10" | ||
|
|
||
| - name: Build virtualenv | ||
| if: steps.docs-cache.outputs.cache-hit != 'true' | ||
|
|
@@ -401,18 +409,16 @@ jobs: | |
| if: steps.docs-cache.outputs.cache-hit != 'true' | ||
| run: venv-stable/bin/activate && make -C python | ||
|
|
||
| - name: Build Docs | ||
| - name: Build Stable Docs | ||
| if: steps.docs-cache.outputs.cache-hit != 'true' | ||
| run: | | ||
| rm -rf docs/_build | ||
| venv-stable/bin/activate | ||
| # Install jsonschema for bugfix | ||
| pip install jsonschema[format-nongpl]==4.17.3 | ||
| cd docs | ||
| ### Temp changes for theme | ||
| pip install tskit-book-theme | ||
| sed -i 's/ config:/ config:\n html_theme: tskit_book_theme\n pygments_style: monokai/g' _config.yml | ||
| ### Temp changes for theme | ||
| # A sphinx-book-theme breaking change needs this | ||
| sed -i '/html_theme_options:/a\ \ \ \ \ \ \ \ navigation_with_keys: False' _config.yml | ||
| make dist || make | ||
| - name: Copy docs | ||
|
|
@@ -430,7 +436,7 @@ jobs: | |
| build-pyslim-docs: | ||
| name: Build pyslim docs | ||
| needs: cancel-superseded | ||
| runs-on: ubuntu-20.04 | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| name: Checkout pyslim | ||
|
|
@@ -454,7 +460,7 @@ jobs: | |
| if: steps.docs-cache.outputs.cache-hit != 'true' | ||
| name: Setup Python | ||
| with: | ||
| python-version: 3.8 | ||
| python-version: "3.10" | ||
|
|
||
| - name: Build latest SLiM | ||
| if: steps.docs-cache.outputs.cache-hit != 'true' | ||
|
|
@@ -475,7 +481,7 @@ jobs: | |
| venv-latest/bin/activate | ||
| pip install -r requirements/CI-docs/requirements.txt | ||
| - name: Build Docs | ||
| - name: Build Latest Docs | ||
| if: steps.docs-cache.outputs.cache-hit != 'true' | ||
| run: | | ||
| venv-latest/bin/activate | ||
|
|
@@ -524,13 +530,16 @@ jobs: | |
| # venv-stable/bin/activate | ||
| # pip install -r requirements/CI-docs/requirements.txt | ||
|
|
||
| - name: Build Docs | ||
| - name: Build Stable Docs | ||
| if: steps.docs-cache.outputs.cache-hit != 'true' | ||
| run: | | ||
| rm -rf docs/_build | ||
| venv-latest/bin/activate | ||
| export PATH=$PWD/SLiM/Stable:$PATH | ||
| cd docs | ||
| # A sphinx-book-theme breaking change needs this | ||
| sed -i '/html_theme_options:/a\ \ \ \ \ navigation_with_keys: False' _config.yml | ||
| # don't re-generate these which require tricky prerequisites (inkscape, xmlstarlet) | ||
| touch _static/{pedigree0.svg,pedigree1.svg,pedigree2.svg,pedigree_recapitate.svg,pedigree_simplify.svg,pedigree_mutate.svg} | ||
| touch _static/{pedigree01.png,pedigree0.png,pedigree1.png,pedigree2.png,pedigree_recapitate.png,pedigree_simplify.png,pedigree_mutate.png} | ||
|
|
@@ -552,7 +561,7 @@ jobs: | |
| build-tstrait-docs: | ||
| name: Build tstrait docs | ||
| needs: cancel-superseded | ||
| runs-on: ubuntu-20.04 | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| name: Checkout tstrait | ||
|
|
@@ -585,7 +594,7 @@ jobs: | |
| run: | | ||
| venv-latest/bin/activate && pip install -r requirements/CI-docs/requirements.txt | ||
| - name: Build Docs | ||
| - name: Build Latest Docs | ||
| if: steps.docs-cache.outputs.cache-hit != 'true' | ||
| run: | | ||
| venv-latest/bin/activate | ||
|
|
@@ -607,7 +616,7 @@ jobs: | |
| git checkout `git tag --list --sort=creatordate | grep -vi "[baC]" | tail -n1` | ||
| git status | ||
| - name: Build Docs | ||
| - name: Build Stable Docs | ||
| if: steps.docs-cache.outputs.cache-hit != 'true' | ||
| run: | | ||
| rm -rf docs/_build | ||
|
|
@@ -631,7 +640,7 @@ jobs: | |
| import-tutorials: | ||
| name: Import tutorials | ||
| needs: cancel-superseded | ||
| runs-on: ubuntu-20.04 | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| name: Checkout tutorials | ||
|
|
@@ -648,7 +657,7 @@ jobs: | |
| import-rust-tutorial: | ||
| name: Import rust tutorials | ||
| needs: cancel-superseded | ||
| runs-on: ubuntu-20.04 | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| name: Checkout tutorials | ||
|
|
@@ -673,7 +682,7 @@ jobs: | |
| - build-pyslim-docs | ||
| - import-tutorials | ||
| - import-rust-tutorial | ||
| runs-on: ubuntu-20.04 | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Download core site | ||
| uses: actions/download-artifact@v2 | ||
|
|
||