Prepare for next release

CITATION.cff

@@ -1,15 +1,46 @@
-# -----------------------------------------------------------
-# CITATION file created with {cffr} R package, v0.5.0
+# --------------------------------------------
+# CITATION file created with {cffr} R package
 # See also: https://docs.ropensci.org/cffr/
-# -----------------------------------------------------------
+# --------------------------------------------
 
 cff-version: 1.2.0
 message: 'To cite package "kairos" in publications use:'
 type: software
 license: GPL-3.0-or-later
 title: 'kairos: Analysis of Chronological Patterns from Archaeological Count Data'
-version: 2.1.0
+version: 2.1.1
 doi: 10.5281/zenodo.5653896
+identifiers:
+- description: The concept DOI.
+  type: doi
+  value: 10.5281/zenodo.5653896
+- description: The versioned DOI for version 1.0.0.
+  type: doi
+  value: 10.5281/zenodo.5653897
+- description: The versioned DOI for version 1.0.1.
+  type: doi
+  value: 10.5281/zenodo.6349207
+- description: The versioned DOI for version 1.1.0.
+  type: doi
+  value: 10.5281/zenodo.6659732
+- description: The versioned DOI for version 1.2.0.
+  type: doi
+  value: 10.5281/zenodo.7307327
+- description: The versioned DOI for version 2.0.0.
+  type: doi
+  value: 10.5281/zenodo.8301347
+- description: The versioned DOI for version 2.0.1.
+  type: doi
+  value: 10.5281/zenodo.8318621
+- description: The versioned DOI for version 2.0.2.
+  type: doi
+  value: 10.5281/zenodo.10209640
+- description: The versioned DOI for version 2.1.0.
+  type: doi
+  value: 10.5281/zenodo.10711260
+- description: The Software Heritage identifier for version 1.0.1.
+  type: swh
+  value: swh:1:rel:508add25987e0fc9f3f29793df5578337ae2c338
 abstract: A toolkit for absolute and relative dating and analysis of chronological
   patterns. This package includes functions for chronological modeling and dating
   of archaeological assemblages from count data. It provides methods for matrix seriation.
@@ -31,13 +62,12 @@ preferred-citation:
     orcid: https://orcid.org/0000-0001-5759-4944
     affiliation: Université Bordeaux Montaigne
   year: '2024'
-  location:
-    name: Pessac, France
-  notes: R package version 2.1.0
-  url: https://packages.tesselle.org/kairos/
-  doi: 10.5281/zenodo.5653896
   institution:
     name: Université Bordeaux Montaigne
+    address: Pessac, France
+  notes: R package version 2.1.1
+  url: https://packages.tesselle.org/kairos/
+  doi: 10.5281/zenodo.5653896
 repository: https://CRAN.R-project.org/package=kairos
 repository-code: https://github.com/tesselle/kairos
 url: https://packages.tesselle.org/kairos/
@@ -60,11 +90,10 @@ references:
   url: https://www.R-project.org/
   authors:
   - name: R Core Team
-  location:
-    name: Vienna, Austria
-  year: '2024'
   institution:
     name: R Foundation for Statistical Computing
+    address: Vienna, Austria
+  year: '2024'
   version: '>= 3.5'
 - type: software
   title: dimensio
@@ -79,13 +108,14 @@ references:
     orcid: https://orcid.org/0000-0001-5759-4944
     affiliation: Université Bordeaux Montaigne
   year: '2024'
-  version: '>= 0.6.0'
+  doi: 10.32614/CRAN.package.dimensio
+  version: '>= 0.8.0'
 - type: software
   title: aion
   abstract: 'aion: Archaeological Time Series'
   notes: Imports
   url: https://packages.tesselle.org/aion/
-  repository: https://CRAN.R-project.org/package=aion
+  repository: https://tesselle.r-universe.dev
   authors:
   - family-names: Frerebeau
     given-names: Nicolas
@@ -98,7 +128,8 @@ references:
     orcid: https://orcid.org/0000-0002-1011-1244
     affiliation: Universität Bern
   year: '2024'
-  version: '>= 1.0.2'
+  doi: 10.32614/CRAN.package.aion
+  version: '>= 1.0.4'
 - type: software
   title: arkhe
   abstract: 'arkhe: Tools for Cleaning Rectangular Data'
@@ -112,6 +143,7 @@ references:
     orcid: https://orcid.org/0000-0001-5759-4944
     affiliation: Université Bordeaux Montaigne
   year: '2024'
+  doi: 10.32614/CRAN.package.arkhe
   version: '>= 1.6.0'
 - type: software
   title: extraDistr
@@ -123,50 +155,51 @@ references:
   - family-names: Wolodzko
     given-names: Tymoteusz
   year: '2024'
+  doi: 10.32614/CRAN.package.extraDistr
 - type: software
   title: grDevices
   abstract: 'R: A Language and Environment for Statistical Computing'
   notes: Imports
   authors:
   - name: R Core Team
-  location:
-    name: Vienna, Austria
-  year: '2024'
   institution:
     name: R Foundation for Statistical Computing
+    address: Vienna, Austria
+  year: '2024'
+  doi: 10.32614/CRAN.package.grDevices
 - type: software
   title: methods
   abstract: 'R: A Language and Environment for Statistical Computing'
   notes: Imports
   authors:
   - name: R Core Team
-  location:
-    name: Vienna, Austria
-  year: '2024'
   institution:
     name: R Foundation for Statistical Computing
+    address: Vienna, Austria
+  year: '2024'
+  doi: 10.32614/CRAN.package.methods
 - type: software
   title: stats
   abstract: 'R: A Language and Environment for Statistical Computing'
   notes: Imports
   authors:
   - name: R Core Team
-  location:
-    name: Vienna, Austria
-  year: '2024'
   institution:
     name: R Foundation for Statistical Computing
+    address: Vienna, Austria
+  year: '2024'
+  doi: 10.32614/CRAN.package.stats
 - type: software
   title: utils
   abstract: 'R: A Language and Environment for Statistical Computing'
   notes: Imports
   authors:
   - name: R Core Team
-  location:
-    name: Vienna, Austria
-  year: '2024'
   institution:
     name: R Foundation for Statistical Computing
+    address: Vienna, Austria
+  year: '2024'
+  doi: 10.32614/CRAN.package.utils
 - type: software
   title: folio
   abstract: 'folio: Datasets for Teaching Archaeology and Paleontology'
@@ -180,6 +213,7 @@ references:
     orcid: https://orcid.org/0000-0001-5759-4944
     affiliation: Université Bordeaux Montaigne
   year: '2024'
+  doi: 10.32614/CRAN.package.folio
   version: '>= 1.4.0'
 - type: software
   title: knitr
@@ -193,6 +227,7 @@ references:
     email: [email protected]
     orcid: https://orcid.org/0000-0003-0645-5666
   year: '2024'
+  doi: 10.32614/CRAN.package.knitr
 - type: software
   title: markdown
   abstract: 'markdown: Render Markdown with ''commonmark'''
@@ -209,6 +244,7 @@ references:
   - family-names: Horner
     given-names: Jeffrey
   year: '2024'
+  doi: 10.32614/CRAN.package.markdown
 - type: software
   title: rsvg
   abstract: 'rsvg: Render SVG Images into PDF, PNG, (Encapsulated) PostScript, or
@@ -222,6 +258,7 @@ references:
     email: [email protected]
     orcid: https://orcid.org/0000-0002-4035-0289
   year: '2024'
+  doi: 10.32614/CRAN.package.rsvg
 - type: software
   title: svglite
   abstract: 'svglite: An ''SVG'' Graphics Device'
@@ -249,6 +286,7 @@ references:
     given-names: Vaudor
     email: [email protected]
   year: '2024'
+  doi: 10.32614/CRAN.package.svglite
 - type: software
   title: tabula
   abstract: 'tabula: Analysis and Visualization of Archaeological Count Data'
@@ -261,8 +299,9 @@ references:
     email: [email protected]
     orcid: https://orcid.org/0000-0001-5759-4944
     affiliation: Université Bordeaux Montaigne
-  version: '>= 3.0.1'
   year: '2024'
+  doi: 10.32614/CRAN.package.tabula
+  version: '>= 3.1.0'
 - type: software
   title: tinysnapshot
   abstract: 'tinysnapshot: Snapshots for Unit Tests using the ''tinytest'' Framework'
@@ -275,46 +314,19 @@ references:
     email: [email protected]
     orcid: https://orcid.org/0000-0003-2042-7063
   year: '2024'
+  doi: 10.32614/CRAN.package.tinysnapshot
 - type: software
   title: tinytest
   abstract: 'tinytest: Lightweight and Feature Complete Unit Testing Framework'
   notes: Suggests
   url: https://github.com/markvanderloo/tinytest
   repository: https://CRAN.R-project.org/package=tinytest
   authors:
-  - family-names: van der Loo
+  - family-names: Loo
     given-names: Mark
+    name-particle: van der
     email: [email protected]
     orcid: https://orcid.org/0000-0002-9807-4686
   year: '2024'
-identifiers:
-- description: The concept DOI.
-  type: doi
-  value: 10.5281/zenodo.5653896
-- description: The versioned DOI for version 1.0.0.
-  type: doi
-  value: 10.5281/zenodo.5653897
-- description: The versioned DOI for version 1.0.1.
-  type: doi
-  value: 10.5281/zenodo.6349207
-- description: The versioned DOI for version 1.1.0.
-  type: doi
-  value: 10.5281/zenodo.6659732
-- description: The versioned DOI for version 1.2.0.
-  type: doi
-  value: 10.5281/zenodo.7307327
-- description: The versioned DOI for version 2.0.0.
-  type: doi
-  value: 10.5281/zenodo.8301347
-- description: The versioned DOI for version 2.0.1.
-  type: doi
-  value: 10.5281/zenodo.8318621
-- description: The versioned DOI for version 2.0.2.
-  type: doi
-  value: 10.5281/zenodo.10209640
-- description: The versioned DOI for version 2.1.0.
-  type: doi
-  value: 10.5281/zenodo.10711260
-- description: The Software Heritage identifier for version 1.0.1.
-  type: swh
-  value: swh:1:rel:508add25987e0fc9f3f29793df5578337ae2c338
+  doi: 10.32614/CRAN.package.tinytest
+

DESCRIPTION

@@ -1,11 +1,11 @@
 Package: kairos
 Title: Analysis of Chronological Patterns from Archaeological Count Data
-Version: 2.1.0.9000
+Version: 2.1.1
 Authors@R: c(
     person("Nicolas", "Frerebeau", , "[email protected]", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-5759-4944", affiliation = "Université Bordeaux Montaigne")),
     person("Brice", "Lebrun", , "[email protected]", role = "ctb",
-           comment = c(ORCID = "0000-0001-7503-8685", affiliation = "Université Bordeaux Montaigne")),
+           comment = c(ORCID = "0000-0001-7503-8685", "Logo designer")),
     person("Ben", "Marwick", , "[email protected]", role = "ctb",
            comment = c(ORCID = "0000-0001-7879-4531", affiliation = "University of Washington")),
     person("Anne", "Philippe", , "[email protected]", role = "ctb",
@@ -27,7 +27,7 @@ Depends:
     R (>= 3.5),
     dimensio (>= 0.8.0)
 Imports: 
-    aion (>= 1.0.3),
+    aion (>= 1.0.4),
     arkhe (>= 1.6.0),
     extraDistr,
     grDevices,
@@ -47,7 +47,7 @@ VignetteBuilder:
     knitr
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.0
+RoxygenNote: 7.3.2
 Collate: 
     'AllClasses.R'
     'AllGenerics.R'

NEWS.md

@@ -1,4 +1,6 @@
-# kairos 2.1.0.9000
+# kairos 2.1.1
+## Internals
+* Use latest dependencies.
 
 # kairos 2.1.0
 ## New classes and methods

R/kairos-package.R

@@ -2,7 +2,7 @@
 #' \tabular{ll}{
 #'  **Package:** \tab kairos \cr
 #'  **Type:** \tab Package \cr
-#'  **Version:** \tab 2.1.0 \cr
+#'  **Version:** \tab 2.1.1 \cr
 #'  **License:** \tab GPL-3 \cr
 #' }
 #'
@@ -18,7 +18,7 @@
 #'
 #' \tabular{ll}{
 #'  Nicolas Frerebeau \tab *Université Bordeaux Montaigne, France* \cr
-#'  Brice Lebrun \tab *Université Bordeaux Montaigne, France* \cr
+#'  Brice Lebrun \tab  \cr
 #'  Ben Marwick \tab *University of Washington, USA* \cr
 #'  Anne Philippe \tab *Université de Nantes, France* \cr
 #' }

README.Rmd

@@ -21,7 +21,7 @@ Sys.setlocale("LC_MESSAGES", 'en_GB.UTF-8') # Force locale
 [![R-CMD-check](https://github.com/tesselle/kairos/workflows/R-CMD-check/badge.svg)](https://github.com/tesselle/kairos/actions)
 [![codecov](https://codecov.io/gh/tesselle/kairos/branch/master/graph/badge.svg)](https://app.codecov.io/gh/tesselle/kairos)
 [![CodeFactor](https://www.codefactor.io/repository/github/tesselle/kairos/badge)](https://www.codefactor.io/repository/github/tesselle/kairos)
-[![Dependencies](https://tinyverse.netlify.com/badge/kairos)](https://cran.r-project.org/package=kairos)
+[![Dependencies](https://tinyverse.netlify.app/badge/kairos)](https://cran.r-project.org/package=kairos)
 
 [![r-universe](https://tesselle.r-universe.dev/badges/kairos)](https://tesselle.r-universe.dev/kairos){.pkgdown-devel}
 [![CRAN Version](http://www.r-pkg.org/badges/version/kairos)](https://cran.r-project.org/package=kairos){.pkgdown-release}
@@ -45,8 +45,11 @@ A convenient and reproducible toolkit for relative and absolute dating and analy
 
 [**tabula**](https://packages.tesselle.org/tabula/) is a companion package to **kairos** that provides functions for visualization and analysis of archaeological count data.
 
-```{r citation, echo=FALSE, comment=''}
-utils::citation("kairos")
+---
+
+```{r citation, echo=FALSE, comment='', results='asis'}
+cite <- utils::citation("kairos")
+print(cite, bibtex = FALSE)
 ```
 
 ## Installation