AllMine is flexible and parallel pipeline for allele mining. You can use AllMine to discover de novo Single Nucleotide Polymorphism (SNPs) onto next generation sequencing data of various types (RNAseq, WGS, RRGS ect.). AllMine working principle is to compare your sequencing data to a annotated reference sequence to call SNPs. By defining target regions onto your reference sequence, your can extract specific SNPs and discover allele polymorphism.
- Snakemake >= V4.8.0
- Python3 >= V3.5.3
- including modules csv and yaml
- Slurm >= V0.4.3
- Singularity >= V2.5.1