Remove logger for dcm2bids_helper

dcm2bids/dcm2niix.py

@@ -11,13 +11,14 @@ class Dcm2niix(object):
     """
     """
 
-    def __init__(self, dicom_dir, bids_dir, participant=None):
+    def __init__(self, dicom_dir, bids_dir, participant=None, logger=True):
         self.dicomDirs = dicom_dir
         self.bidsDir = bids_dir
         self.participant = participant
         self.options = "-b y -ba y -z y -f '%3s_%f_%p_%t'"
         self.sidecars = []
-        self.logger = logging.getLogger("dcm2bids")
+        if logger:
+            self.logger = logging.getLogger("dcm2bids")
 
     @property
     def outputDir(self):

scripts/dcm2bids_helper

@@ -38,7 +38,9 @@ def main():
     args = get_arguments()
     app = Dcm2niix(
             dicom_dir=args.dicom_dir,
-            bids_dir=args.output_dir)
+            bids_dir=args.output_dir,
+            logger=False,
+            )
     rsl = app.run()
     print("Example in:")
     print(os.path.join(args.output_dir, "tmp_dcm2bids", "helper"))

setup.py

@@ -16,7 +16,7 @@
 
 DISTNAME = "dcm2bids"
 DESCRIPTION = description
-VERSION = "1.1.6"
+VERSION = "1.1.7"
 AUTHOR = "Christophe Bedetti"
 AUTHOR_EMAIL = "[email protected]"
 URL = "https://github.com/cbedetti/Dcm2Bids"