Add multiple dicot pipeline (#71)

* Add multiple dicot pipeline

* Black

* Fetch LFS files during CI

* Lint

* Lint

* Add batch processing per group

* Return NaN filled arrays for root widths as default

* Add notebook for testing

* Changes to notebook

* Return NaNs as default in root widths

* Compute grouped summaries for multiple dicots

* Add output directory for group trait files

.gitattributes

@@ -0,0 +1,3 @@
+*.h5 filter=lfs diff=lfs merge=lfs -text
+*.slp filter=lfs diff=lfs merge=lfs -text
+*.type filter=lfs diff=lfs merge=lfs -text

.github/workflows/ci.yml

@@ -66,6 +66,8 @@ jobs:
     steps:
       - name: Checkout repo
         uses: actions/checkout@v3
+        with:
+          lfs: true # Fetch large files with Git LFS
 
       - name: Setup Micromamba
         # https://github.com/mamba-org/setup-micromamba