option without alignment (alignment_method: '0')

tahiri-lab · Nov 19, 2024 · 0b015ab · 0b015ab
1 parent ed0133a
commit 0b015ab
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/aphylogeo/alignement.py b/aphylogeo/alignement.py
@@ -187,8 +187,10 @@ def align(self) -> Alignment:
         Returns:
             Alignment: The alignment object
         """
-
-        if Params.alignment_method == "1":
+        if Params.alignment_method == "0":
+            heuristicMSA = self.sequences
+
+        elif Params.alignment_method == "1":
             centroidKey = self.getSequenceCentroid()[0]
             centroidSeq = self.sequences.pop(centroidKey)
             aligned = self.alignSequencesWithPairwise(centroidKey, centroidSeq)