add imports in init files #29
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| name: "QSAR CI/CD Pipeline" | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - develop | |
| pull_request: | |
| branches: | |
| - main | |
| - develop | |
| release: | |
| types: [ created ] | |
| permissions: | |
| contents: write | |
| jobs: | |
| lint-and-static-analysis: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Upgrade pip | |
| run: python -m pip install --upgrade pip | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 pylint black isort | |
| - name: Run Linters and Static Analysis | |
| continue-on-error: true | |
| run: | | |
| flake8 qsar/ tests/ | |
| pylint qsar/ tests/ | |
| black qsar/ tests/ --check | |
| isort qsar/ tests/ --check-only | |
| unit-tests-and-coverage: | |
| needs: lint-and-static-analysis | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Install dependencies | |
| uses: py-actions/py-dependency-install@v4 | |
| with: | |
| path: "requirements.txt" | |
| - name: Run unit tests with pytest | |
| run: | | |
| pip install pytest pytest-cov | |
| pytest tests/ --cov=qsar --cov-report=xml --cov-report=html | |
| security-scan: | |
| needs: unit-tests-and-coverage | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Install Safety | |
| run: | | |
| pip install safety | |
| - name: Run Safety to check dependencies for security vulnerabilities | |
| continue-on-error: true | |
| run: | | |
| safety check | |
| build-deploy-docs: | |
| needs: security-scan | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Install dependencies | |
| uses: py-actions/py-dependency-install@v4 | |
| with: | |
| path: "requirements.txt" | |
| - name: Sphinx build | |
| run: | | |
| sphinx-build docs _build | |
| - name: Deploy to GitHub Pages | |
| uses: peaceiris/actions-gh-pages@v3 | |
| if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }} | |
| with: | |
| publish_branch: gh-pages | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: _build/ | |
| force_orphan: true |