ENH: Update dockerfile and rename script

Docerfile includes steps for copying and running the script.
Script renamed to make it clear what dependencies are being installed

jupyter-llm-notebook/Dockerfile

@@ -8,17 +8,14 @@ RUN apt-get update && \
     apt-get autoremove -y && \
     rm -rf /var/lib/apt/lists/*
 
+COPY install-sciml-deps.sh /home/${NB_USER}
+RUN chown ${NB_UID} /home/${NB_USER}/install-sciml-deps.sh
+RUN chmod +rx /home/${NB_USER}/install-sciml-deps.sh
+
 USER $NB_UID
-RUN set -ex \
- && buildDeps=' \
-    transformers \
-    accelerate \
-    bitsandbytes \
- ' \
- && pip install --no-cache-dir $buildDeps \
+RUN /home/${NB_USER}/install-sciml-deps.sh \
  && fix-permissions "${CONDA_DIR}" \
  && fix-permissions "/home/${NB_USER}"
 
 #switch back to jovyan to avoid accidental container runs as root
-USER ${NB_UID}
-
+USER ${NB_UID}

jupyter-llm-notebook/install-sciml-deps.sh

@@ -0,0 +1,31 @@
+#!/bin/bash
+
+echo -e "\nUninstalling conflicting libraries...\n"
+pip uninstall -y tensorflow
+
+echo -e "\nInstalling essential Python libraries...\n"
+pip install --no-cache-dir --upgrade flask gdown jupyter matplotlib numpy pandas scipy spacy tqdm
+
+echo -e "\nInstalling PyTorch...\n"
+pip install --no-cache-dir --upgrade torch torchvision torchaudio
+
+echo -e "\nInstalling HuggingFace libraries...\n"
+pip install --no-cache-dir --upgrade huggingface_hub transformers accelerate
+
+echo -e "\nInstalling bitsandbytes...\n"
+pip install --no-cache-dir bitsandbytes -U
+
+echo -e "\nInstalling LLM libraries...\n"
+pip install --no-cache-dir --upgrade faiss-cpu networkx langchain langchain_community langgraph vllm
+
+echo -e "\nDownloading spaCy language model...\n"
+python -m spacy download en_core_web_sm
+
+echo -e "\nInstalling Localtunnel...\n"
+npm install -g localtunnel
+
+echo -e "\nInstalling Ollama...\n"
+OLLAMA_DIR="/home/${NB_USER}/ollama"
+OLLAMA_RELEASE_URL="https://github.com/ollama/ollama/releases/download/v0.4.2/ollama-linux-amd64.tgz"
+mkdir -p "$OLLAMA_DIR"
+wget --quiet --show-progress -O- "$OLLAMA_RELEASE_URL" | tar -xz -C "$OLLAMA_DIR"