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NetCoMi 1.0.3
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@stefpeschel stefpeschel released this 26 Jun 15:40
v1.0.3
65a4790

This is a minor release with some bug fixes and changes in the documentation.

Bug fixes

  • netConstruct() threw an error if the data had no row and/or column names, which is fixed.

  • An edge list is added to the output of netConstruct() (issue #41). See the help page for details.

  • SPRING's fast version of latent correlation computation (implemented in mixedCCA) is currently not available due to deprecation of the R package chebpol. The issue is fixed by setting the netConstruct() parameter measurePar$Rmethod internally to "original" if SPRING is used for association estimation.

  • In plot.microNetProps(): The xpd parameter is changed to NA so that plotting outside the plot region is possible (useful for legends or additional text).

  • Labels in the network plot can now be suppressed by setting labels = FALSE (issue #43)

  • The netCompare() function threw an error if one of the permutation networks was empty, i.e. had no edges with weight different from zero (issue #38), which is now fixed.

  • Fix issues #29 and #40, where permutation tests did not terminate for small sample sizes. Now, if the possible number of permutations (resulting from the sample size) is smaller than that defined by the user, the function stops and returns an error.

  • Fix a bug in diffnet() (issue #51), where colors in differential networks could not be changed.

  • diffnet() threw an error if the netConstruct() argument jointPrepro was set to TRUE.

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